WormBase Tree Display for CDS: Y54G2A.1
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| Y54G2A.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y54G2A | |||
| Structure | Source_exons | 1 | 69 | |||
| 167 | 259 | |||||
| 2117 | 2476 | |||||
| DB_info | Database | SwissProt | UniProtAcc | G5EF76 | ||
| UniProt | UniProtAcc | G5EF76 | ||||
| UniProt_GCRP | UniProtAcc | G5EF76 | ||||
| AlphaFold | entry | G5EF76 | ||||
| NCBI_protein | GI_number | GI:351051318 | ||||
| Protein_id | CHROMOSOME_IV | CCD83486 | 1 | |||
| DB_remark | LIN-22 protein; contains similarity to Pfam domain PF00010 (Helix-loop-helix DNA-binding domain); contains similarity to Interpro domains IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00003008 | ||||
| Corresponding_transcript | Y54G2A.1.1 | |||||
| Corresponding_protein | CE26703 | |||||
| Corresponding_PCR_product | cenix:170-e5 | |||||
| mv_AAB68848 | ||||||
| Corresponding_oligo_set | 175682_at | |||||
| A_12_P144735 | ||||||
| A_12_P144736 | ||||||
| A_12_P144737 | ||||||
| Aff_Y94H6A_127.A | ||||||
| GPL13394_WBGene00003008 | ||||||
| GPL13914_Y54G2A.1 | ||||||
| GPL14144_Y54G2A.1_195-254_0.934_5_B | ||||||
| GPL14144_Y54G2A.1_348-407_0.949_3_A | ||||||
| GPL14144_Y54G2A.1_9-68_0.782_46_C | ||||||
| GPL19516_CGZ0049153 | ||||||
| GPL21109_Y54G2A.1 | ||||||
| GPL3518_CE26703 | ||||||
| GPL8304_CE_WBGene00003008_A | ||||||
| GPL8304_CE_WBGene00003008_B | ||||||
| GPL8673_Y54G2A_1P00001 | ||||||
| GPL8673_Y54G2A_1P00398 | ||||||
| GPL8673_Y54G2A_1P00417 | ||||||
| Matching_cDNA | EM_Nanopore_Li_369752 | Inferred_automatically | transcript_builder.pl | |||
| elegans_PE_SS_GG8054|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_349386 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00057436 | |||||
| Microarray_results (18) | ||||||
| Brief_identification | Helix-loop-helix protein lin-22 | Accession_evidence | UniProt | SP:G5EF76 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 12 Sep 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [010105 db] created based on data communicated by Dan Lawson | Curator_confirmed | WBPerson1848 | |||
| Associated_feature | WBsf979694 | |||||
| Method | curated |
