WormBase Tree Display for CDS: B0353.1a
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| B0353.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | |||
| Structure | Source_exons | 1 | 27 | |||
| 5414 | 5508 | |||||
| 7424 | 7591 | |||||
| 11252 | 11369 | |||||
| 14634 | 14807 | |||||
| 14853 | 14957 | |||||
| 15940 | 16098 | |||||
| 13828 | 14071 | |||||
| 11851 | 11987 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q10958 | ||
| UniProt | UniProtAcc | Q10958 | ||||
| UniProt_GCRP | UniProtAcc | Q10958 | ||||
| AlphaFold | entry | Q10958 | ||||
| NCBI_protein | GI_number | GI:1238017058 | ||||
| Protein_id | CHROMOSOME_III | CCD61806 | 2 | |||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | C50210 | |||
| Visible | Gene | WBGene00015155 | ||||
| Corresponding_transcript | B0353.1a.1 | |||||
| Corresponding_protein | CE52037 | |||||
| Corresponding_PCR_product | TH:328F1 | |||||
| cenix:190-c8 | ||||||
| cenix:328-f1 | ||||||
| mv_B0353.1 | ||||||
| mv_Y55B1AL.c | ||||||
| sjj_B0353.1 | ||||||
| sjj_Y55B1A_122.c | ||||||
| Corresponding_oligo_set (30) | ||||||
| Matching_cDNA | male_Nanopore_Roach_146307 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_776 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_87792 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_121889 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_105024 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_5051 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_5484 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_35314 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_31605 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_89403 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_94169 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_5169 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_36646 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_65224 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_4868 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_94850 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_101549 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_61841 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_370159 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_22348 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6956|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR056B5_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_366491 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_44717 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_268018 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_49546 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_4993 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_5522 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_307562 | Inferred_automatically | transcript_builder.pl | ||||
| yk478h8.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_6060 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_3625 | Inferred_automatically | transcript_builder.pl | ||||
| yk481a5.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_159372 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_267971 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_219092 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_274431 | Inferred_automatically | transcript_builder.pl | ||||
| yk525h6.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk102h8.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_307994 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_117342 | Inferred_automatically | transcript_builder.pl | ||||
| yk221e10.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR051C7_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_269919 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_314013 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_218458 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_100642 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF056B5_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_362220 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_59982 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_49933 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00028103 | |||||
| WBRNAi00006635 | ||||||
| WBRNAi00057493 | ||||||
| WBRNAi00037505 | ||||||
| WBRNAi00009724 | ||||||
| WBRNAi00038966 | ||||||
| WBRNAi00021008 | ||||||
| Microarray_results (33) | ||||||
| Brief_identification | ASD2 domain-containing protein | Accession_evidence | UniProt | TR:Q9N391 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 10 May 2017 16:57:19 | WBPerson1983 | ||||
| Remark | [000110 db] added two new 5' exons based on EST data | Curator_confirmed | WBPerson1848 | |||
| [010505 js] added new first exon based on EST data | Curator_confirmed | WBPerson615 | ||||
| WBPerson1848 | ||||||
| [170510 pad] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
