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WormBase Tree Display for CDS: F38A3.2

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Name Class

F38A3.2EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceF38A3
StructureSource_exons183
2961133
DB_infoDatabaseTrEMBLUniProtAccQ20136
UniProtUniProtAccQ20136
UniProt_GCRPUniProtAccQ20136
AlphaFoldentryQ20136
NCBI_proteinGI_numberGI:3876828
Protein_idCHROMOSOME_IICAA901881
DB_remarkRAM-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00004300
Corresponding_transcriptF38A3.2.1
Corresponding_proteinCE02214
Corresponding_PCR_productcenix:184-c6
mv_F38A3.2
sjj_F38A3.2
Corresponding_oligo_set (22)
Matching_cDNAmale_Nanopore_Roach_107191Inferred_automaticallytranscript_builder.pl
male_Nanopore_Roach_132780
male_Nanopore_Roach_133399
male_Nanopore_Roach_135041
male_Nanopore_Roach_138912
male_Nanopore_Roach_141437
male_Nanopore_Roach_153513
young_adult_Nanopore_Roach_85647Inferred_automaticallytranscript_builder.pl
young_adult_Nanopore_Roach_111620
young_adult_Nanopore_Roach_112808
young_adult_Nanopore_Roach_113330
young_adult_Nanopore_Roach_116535
L4_Nanopore_Roach_58720
L2_Nanopore_Roach_91216
L3_Nanopore_Roach_86203
L2_Nanopore_Roach_91771
L3_Nanopore_Roach_87346
L3_Nanopore_Roach_84536
L3_Nanopore_Roach_84976
L3_Nanopore_Roach_84596
L4_Nanopore_Roach_59286
L2_Nanopore_Roach_90704
L3_Nanopore_Roach_86704
L3_Nanopore_Roach_83602
L2_Nanopore_Roach_88263
L2_Nanopore_Roach_91736
L4_Nanopore_Roach_58729
L3_Nanopore_Roach_85725
L3_Nanopore_Roach_84493
L2_Nanopore_Roach_90902
L2_Nanopore_Roach_91996
L3_Nanopore_Roach_86150
L3_Nanopore_Roach_85938
L3_Nanopore_Roach_87250
L2_Nanopore_Roach_90760
L4_Nanopore_Roach_60130
L3_Nanopore_Roach_84785
L1_Nanopore_Roach_89805
L4_Nanopore_Roach_60455
L4_Nanopore_Roach_59903
L4_Nanopore_Roach_51732
L4_Nanopore_Roach_59734
L3_Nanopore_Roach_84090
L4_Nanopore_Roach_58549
L4_Nanopore_Roach_58413
L3_Nanopore_Roach_84958
L3_Nanopore_Roach_85699
L2_Nanopore_Roach_91197
L2_Nanopore_Roach_88829
L3_Nanopore_Roach_86107
L4_Nanopore_Roach_58957
L4_Nanopore_Roach_59907
L4_Nanopore_Roach_60286
L3_Nanopore_Roach_85160
L4_Nanopore_Roach_59510
L3_Nanopore_Roach_85298
adult_Nanopore_Roach_93865
L4_Nanopore_Roach_59029
L4_Nanopore_Roach_60469
L2_Nanopore_Roach_89533
L2_Nanopore_Roach_91417
L2_Nanopore_Roach_88860
L2_Nanopore_Roach_89881
L3_Nanopore_Roach_86868
L2_Nanopore_Roach_89697
L2_Nanopore_Roach_90112
L3_Nanopore_Roach_77313
L2_Nanopore_Roach_90543
L2_Nanopore_Roach_91928
L2_Nanopore_Roach_91093
L4_Nanopore_Roach_60068
L3_Nanopore_Roach_85159
L4_Nanopore_Roach_59126
L2_Nanopore_Roach_88387
L4_Nanopore_Roach_59183
L3_Nanopore_Roach_86864
L4_Nanopore_Roach_58122
L3_Nanopore_Roach_84365
L3_Nanopore_Roach_85486
L4_Nanopore_Roach_60376
L2_Nanopore_Roach_89246
L3_Nanopore_Roach_85175
L4_Nanopore_Roach_57825
L4_Nanopore_Roach_57717
L3_Nanopore_Roach_85557
L4_Nanopore_Roach_57927
L2_Nanopore_Roach_88540
adult_Nanopore_Roach_94477
L3_Nanopore_Roach_86617
L4_Nanopore_Roach_57582
L3_Nanopore_Roach_85507
L3_Nanopore_Roach_86262
L3_Nanopore_Roach_83740
L3_Nanopore_Roach_86744
L4_Nanopore_Roach_16727Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_84791
L3_Nanopore_Roach_84851
L3_Nanopore_Roach_86633
L3_Nanopore_Roach_86920
L4_Nanopore_Roach_43443Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_85405
L2_Nanopore_Roach_91847
L4_Nanopore_Roach_58588
L2_Nanopore_Roach_5559
L3_Nanopore_Roach_85413
L4_Nanopore_Roach_58318
L4_Nanopore_Roach_58337
L2_Nanopore_Roach_88976
L4_Nanopore_Roach_59143
L4_Nanopore_Roach_59670
L3_Nanopore_Roach_84351
L2_Nanopore_Roach_90355
L2_Nanopore_Roach_90653
L3_Nanopore_Roach_86916
L2_Nanopore_Roach_88914
L2_Nanopore_Roach_91249
L2_Nanopore_Roach_89354
L2_Nanopore_Roach_90628
L4_Nanopore_Roach_57612
L4_Nanopore_Roach_60139
L3_Nanopore_Roach_84656
L2_Nanopore_Roach_91094
L4_Nanopore_Roach_59762
L2_Nanopore_Roach_89269
L2_Nanopore_Roach_88915
L4_Nanopore_Roach_59813
L2_Nanopore_Roach_88885
L2_Nanopore_Roach_91576
L3_Nanopore_Roach_86304
L3_Nanopore_Roach_84553
L3_Nanopore_Roach_85749
L2_Nanopore_Roach_91262
L2_Nanopore_Roach_88179
L4_Nanopore_Roach_58127
L2_Nanopore_Roach_89807
L4_Nanopore_Roach_58100
L3_Nanopore_Roach_87401
L1_Nanopore_Roach_89589
L4_Nanopore_Roach_57827
L3_Nanopore_Roach_86322
L3_Nanopore_Roach_83607
L3_Nanopore_Roach_86157
L4_Nanopore_Roach_58005
L2_Nanopore_Roach_91241
L2_Nanopore_Roach_89342
L2_Nanopore_Roach_92165
L3_Nanopore_Roach_85166
L3_Nanopore_Roach_85155
L3_Nanopore_Roach_86636
L3_Nanopore_Roach_85423
L3_Nanopore_Roach_85411
L4_Nanopore_Roach_58241
L3_Nanopore_Roach_84004
L2_Nanopore_Roach_90935
L3_Nanopore_Roach_63683Inferred_automaticallytranscript_builder.pl
L2_Nanopore_Roach_91046
L3_Nanopore_Roach_87344
L4_Nanopore_Roach_59489
L3_Nanopore_Roach_83988
L2_Nanopore_Roach_91815
L3_Nanopore_Roach_86314
L4_Nanopore_Roach_58638
L1_Nanopore_Roach_91863
L3_Nanopore_Roach_83754
L4_Nanopore_Roach_57753
L2_Nanopore_Roach_89122
L3_Nanopore_Roach_86444
L2_Nanopore_Roach_88185
L3_Nanopore_Roach_86192
L4_Nanopore_Roach_59181
L3_Nanopore_Roach_85019
L2_Nanopore_Roach_67738Inferred_automaticallytranscript_builder.pl
L4_Nanopore_Roach_57585
L2_Nanopore_Roach_91929
L4_Nanopore_Roach_58993
L2_Nanopore_Roach_88672
L4_Nanopore_Roach_59133
L3_Nanopore_Roach_84277
L2_Nanopore_Roach_88515
L2_Nanopore_Roach_90910
L2_Nanopore_Roach_89103
L2_Nanopore_Roach_88646
L2_Nanopore_Roach_91400
L4_Nanopore_Roach_58031
L2_Nanopore_Roach_88948
L3_Nanopore_Roach_86042
L4_Nanopore_Roach_58004
L4_Nanopore_Roach_60348
L3_Nanopore_Roach_86249
L3_Nanopore_Roach_86407
L4_Nanopore_Roach_58459
L3_Nanopore_Roach_85476
L4_Nanopore_Roach_60115
L3_Nanopore_Roach_85370
L3_Nanopore_Roach_31259Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_84607
L3_Nanopore_Roach_85784
L3_Nanopore_Roach_85976
L3_Nanopore_Roach_84133
L2_Nanopore_Roach_90839
L2_Nanopore_Roach_90398
L3_Nanopore_Roach_84430
L4_Nanopore_Roach_60294
adult_Nanopore_Roach_93699
L3_Nanopore_Roach_84033
L2_Nanopore_Roach_90621
L4_Nanopore_Roach_59491
L4_Nanopore_Roach_59635
L4_Nanopore_Roach_59699
L4_Nanopore_Roach_58269
adult_Nanopore_Roach_69152Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_86500
L3_Nanopore_Roach_85113
L3_Nanopore_Roach_84029
L4_Nanopore_Roach_59017
L4_Nanopore_Roach_59889
L1_Nanopore_Roach_90716
L3_Nanopore_Roach_34656
L3_Nanopore_Roach_87442
L3_Nanopore_Roach_85089
L3_Nanopore_Roach_85201
L4_Nanopore_Roach_59774
L3_Nanopore_Roach_86178
L2_Nanopore_Roach_88503
L2_Nanopore_Roach_89944
L4_Nanopore_Roach_59189
L2_Nanopore_Roach_91678
L3_Nanopore_Roach_85905
L2_Nanopore_Roach_91634
L4_Nanopore_Roach_58217
L3_Nanopore_Roach_85892
L3_Nanopore_Roach_84877
L3_Nanopore_Roach_84030
L4_Nanopore_Roach_57955
L4_Nanopore_Roach_57747
L4_Nanopore_Roach_58914
L3_Nanopore_Roach_86441
L2_Nanopore_Roach_91340
L3_Nanopore_Roach_84963
L4_Nanopore_Roach_57685
L3_Nanopore_Roach_86958
L4_Nanopore_Roach_58132
L3_Nanopore_Roach_86976
L3_Nanopore_Roach_83824
L3_Nanopore_Roach_83538
L1_Nanopore_Roach_67285Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_84454
L3_Nanopore_Roach_86020
L3_Nanopore_Roach_84894
L2_Nanopore_Roach_88474
L2_Nanopore_Roach_90172
L3_Nanopore_Roach_86371
L2_Nanopore_Roach_89938
L2_Nanopore_Roach_92016
L3_Nanopore_Roach_87257
L3_Nanopore_Roach_85549
L4_Nanopore_Roach_57694
L3_Nanopore_Roach_84677
L2_Nanopore_Roach_90509
L2_Nanopore_Roach_90923
L4_Nanopore_Roach_60167
L2_Nanopore_Roach_91081
L2_Nanopore_Roach_89430
L4_Nanopore_Roach_58820
L3_Nanopore_Roach_84588
L4_Nanopore_Roach_58250
L3_Nanopore_Roach_83492
L4_Nanopore_Roach_59851
L3_Nanopore_Roach_83656
L4_Nanopore_Roach_59743
L2_Nanopore_Roach_89422
elegans_PE_SS_GG3278|c1_g1_i1Inferred_automaticallytranscript_builder.pl
CK578359Inferred_automaticallytranscript_builder.pl
CK577387Inferred_automaticallytranscript_builder.pl
EM_Nanopore_Li_37538Inferred_automaticallytranscript_builder.pl
YA_Nanopore_Li_290919Inferred_automaticallytranscript_builder.pl
yk72c3.5Inferred_automaticallytranscript_builder.pl
EC004795Inferred_automaticallytranscript_builder.pl
EM_Nanopore_Li_304869Inferred_automaticallytranscript_builder.pl
yk1158g04.5Inferred_automaticallytranscript_builder.pl
yk1147c03.5Inferred_automaticallytranscript_builder.pl
yk72h8.5Inferred_automaticallytranscript_builder.pl
EC036072Inferred_automaticallytranscript_builder.pl
yk712g12.5Inferred_automaticallytranscript_builder.pl
OSTF116E4_1Inferred_automaticallytranscript_builder.pl
L1_Nanopore_Li_265518Inferred_automaticallytranscript_builder.pl
yk71f3.5Inferred_automaticallytranscript_builder.pl
yk94f2.5Inferred_automaticallytranscript_builder.pl
yk310f1.5Inferred_automaticallytranscript_builder.pl
RNAi_resultWBRNAi00014522
WBRNAi00007391
WBRNAi00031938
WBRNAi00046667
Microarray_results (23)
Brief_identificationNematode cuticle collagen N-terminal domain-containing proteinAccession_evidenceUniProtTR:Q20136
RNASeq_FPKM (74)
Methodcurated