WormBase Tree Display for CDS: C28A5.6
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| C28A5.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_III | |||
| Structure | Source_exons (15) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5EC33 | ||
| UniProt | UniProtAcc | G5EC33 | ||||
| UniProt_GCRP | UniProtAcc | G5EC33 | ||||
| AlphaFold | entry | G5EC33 | ||||
| NCBI_protein | GI_number | GI:211970328 | ||||
| TREEFAM | TREEFAM_ID | TF318618 | ||||
| Protein_id | CHROMOSOME_III | CAA83602 | 2 | |||
| DB_remark | contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000719 (Protein kinase domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00007791 | ||||
| Corresponding_transcript | C28A5.6.1 | |||||
| Corresponding_protein | CE43230 | |||||
| Corresponding_PCR_product | TH:300E7 | |||||
| cenix:300-e7 | ||||||
| mv_C28A5.6 | ||||||
| sjj_C28A5.6 | ||||||
| smd_C28A5.6 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (21) | ||||||
| RNAi_result | WBRNAi00029291 | |||||
| WBRNAi00087714 | ||||||
| WBRNAi00005052 | ||||||
| WBRNAi00041393 | ||||||
| WBRNAi00011288 | ||||||
| Microarray_results | SMD_C28A5.6 | |||||
| SMD_C28A5.6:2 | ||||||
| 173792_s_at | ||||||
| 176741_s_at | ||||||
| A_12_P115436 | ||||||
| A_12_P143575 | ||||||
| A_12_P163088 | ||||||
| Aff_C28A5.6 | ||||||
| GPL14144_C28A5.6_1387-1446_0.794_110_C | ||||||
| GPL14144_C28A5.6_1857-1916_0.835_76_B | ||||||
| GPL14144_C28A5.6_2269-2328_0.898_22_A | ||||||
| GPL19516_CGZ0006441 | ||||||
| GPL21109_C28A5.6 | ||||||
| GPL3518_CE00673 | ||||||
| GPL8304_CE_WBGene00007791_A | ||||||
| GPL9450_C28A5.6 | ||||||
| cea2.3.04425 | ||||||
| cea2.p.158066 | ||||||
| Brief_identification | Protein kinase domain-containing protein | Accession_evidence | UniProt | TR:G5EC33 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 16 Oct 2008 00:00:00 | WBPerson1983 | ||||
| Remark | Annotated using Pfam | |||||
| [081016 pad] Modified the internal structure of this gene based on multiple lines of evidence. Removed weak splicing and repeat overlaps. This now follows elegans, briggsea and remanei protein homology. | Curator_confirmed | WBPerson1983 | ||||
| Method | curated |
