WormBase Tree Display for CDS: F38A3.2
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| F38A3.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F38A3 | |||
| Structure | Source_exons | 1 | 83 | |||
| 296 | 1133 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q20136 | ||
| UniProt | UniProtAcc | Q20136 | ||||
| UniProt_GCRP | UniProtAcc | Q20136 | ||||
| AlphaFold | entry | Q20136 | ||||
| NCBI_protein | GI_number | GI:3876828 | ||||
| Protein_id | CHROMOSOME_II | CAA90188 | 1 | |||
| DB_remark | RAM-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004300 | ||||
| Corresponding_transcript | F38A3.2.1 | |||||
| Corresponding_protein | CE02214 | |||||
| Corresponding_PCR_product | cenix:184-c6 | |||||
| mv_F38A3.2 | ||||||
| sjj_F38A3.2 | ||||||
| Corresponding_oligo_set (22) | ||||||
| Matching_cDNA (289) | ||||||
| RNAi_result | WBRNAi00014522 | |||||
| WBRNAi00007391 | ||||||
| WBRNAi00031938 | ||||||
| WBRNAi00046667 | ||||||
| Microarray_results | SMD_F38A3.2 | |||||
| 188311_s_at | ||||||
| 194252_x_at | ||||||
| A_12_P153900 | ||||||
| A_12_P153901 | ||||||
| A_12_P153902 | ||||||
| A_12_P153903 | ||||||
| A_12_P153904 | ||||||
| Aff_F38A3.2 | ||||||
| GPL13394_WBGene00004300 | ||||||
| GPL13914_F38A3.2 | ||||||
| GPL14144_F38A3.2_117-176_0.879_11_A | ||||||
| GPL14144_F38A3.2_389-448_0.450_129_C | ||||||
| GPL14144_F38A3.2_398-457_0.599_60_B | ||||||
| GPL19516_CGZ0020337 | ||||||
| GPL21109_F38A3.2 | ||||||
| GPL3518_CE02214 | ||||||
| GPL8304_CE_WBGene00004300_A | ||||||
| GPL8673_F38A3_2P00207 | ||||||
| GPL8673_F38A3_2P00266 | ||||||
| GPL8673_F38A3_2P00425 | ||||||
| GPL9450_F38A3.2 | ||||||
| cea2.c.12153 | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q20136 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
