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WormBase Tree Display for CDS: Y47G6A.20b

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Name Class

Y47G6A.20bEvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceY47G6A
StructureSource_exons196
154318
373531
9181120
22792492
31693312
37793913
48835560
67937248
DB_infoDatabaseSwissProtUniProtAccQ9N3S4
UniProtIsoformAccQ9N3S4-1
UniProtUniProtAccQ9N3S4
UniProt_GCRPUniProtAccQ9N3S4
AlphaFoldentryQ9N3S4
NCBI_proteinGI_numberGI:373220165
TREEFAMTREEFAM_IDTF313987
Protein_idCHROMOSOME_ICCD725651
DB_remarkRNP-6 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR006532 (Poly-U binding splicing factor, PUF60-like), IPR003954 (RNA recognition motif domain, eukaryote), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformAccession_evidenceEMBLAV185909
VisibleGeneWBGene00004389
Corresponding_transcriptY47G6A.20b.1
Corresponding_proteinCE24366
Corresponding_PCR_productcenix:90-g11
mv_Y47G6A.20a
mv_Y47G6A.20b
sjj_Y47G6A_245.f
sjj_Y47G6A_245.g
Corresponding_oligo_set (35)
Matching_cDNA (52)
RNAi_result (17)
Microarray_resultsSMD_Y47G6A_245.F
SMD_Y47G6A_245.G
171942_x_at
190506_s_at
190513_at
A_12_P100035
A_12_P102699
A_12_P108507
A_12_P158400
Aff_Y47G6A_245.F
Aff_Y47G6A_245.G
GPL13394_WBGene00004389
GPL13914_Y47G6A.20
GPL14144_Y47G6A.20b_1836-1895_0.926_11_C
GPL14144_Y47G6A.20b_1973-2032_0.936_5_B
GPL14144_Y47G6A.20b_2043-2102_0.947_3_A
GPL19516_CGZ0046999
GPL19516_CGZ0047000
GPL19516_CGZ0047001
GPL21109_Y47G6A.20a
GPL21109_Y47G6A.20b
GPL21109_Y47G6A.20c
GPL3518_CE24365
GPL3518_CE24366
GPL8304_CE_WBGene00004389_A
GPL8304_CE_WBGene00004389_C
GPL8673_Y47G6A_20aP00012
GPL8673_Y47G6A_20aP00611
GPL8673_Y47G6A_20aP00845
GPL8673_Y47G6A_20bP01238
GPL8673_Y47G6A_20bP01771
GPL8673_Y47G6A_20bP01857
GPL8673_Y47G6A_20cP00012
GPL8673_Y47G6A_20cP00611
GPL8673_Y47G6A_20cP00829
GPL9450_Y47G6A.20a
GPL9450_Y47G6A.20b
cea2.d.44354
cea2.p.21346
Brief_identificationPoly(U)-binding-splicing factor rnp-6Accession_evidenceUniProtSP:Q9N3S4
RNASeq_FPKM (74)
Methodcurated