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WormBase Tree Display for CDS: Bm2434

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Name Class

Bm2434EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr1_scaffold_001
StructureSource_exons1205
13791578
17842025
21642441
25762718
28142918
30033092
32933424
35913815
42124343
44184555
47074799
49735153
53625482
55545646
57535923
61616340
66826817
68967027
78558022
81028206
82788384
84508570
86578755
90229177
93469483
1005710273
1038810544
1079810891
1110411239
1133011445
1157111728
1187412033
1221612431
1283313018
1321513344
1354213666
DB_infoDatabaseTrEMBLUniProtAccA0A0K0J5Z0
UniProtUniProtAccA0A0K0J5Z0
AlphaFoldentryA0A0K0J5Z0
Protein_idBm_v4_Chr1_scaffold_001CRZ255051
DB_remarkBMA-UNC-77 protein; contains similarity to Pfam domain PF00520 (Ion transport protein); contains similarity to Interpro domains IPR005821 (Ion transport domain), IPR028823 (Sodium leak channel NALCN), IPR027359 (Voltage-dependent channel domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00222695
Corresponding_transcriptBm2434.1
Corresponding_proteinBM34514
Matching_cDNAbrugia_GG2392|c17_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG2392|c4_g1_i1Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_913_10Inferred_automaticallytranscript_builder.pl
brugia_GG2392|c10_g2_i1Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007816.1112From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
17.7723From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
19.6028From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
20.142From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
20.6713From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
9.92013From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
9.99813From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
WBls:000008018.3061From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
18.8591From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
20.4695From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
22.1924From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:000008214.1594From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
17.3984From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
17.99From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
18.7348From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
18.877From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (80)
WBls:000009227.5735From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
28.9616From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009436.9168From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
38.8098From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009711.436From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
11.4937From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
11.5627From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
18.7159From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
8.06452From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
9.19004From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
WBls:000066233.3555From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
36.4689From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066337.2563From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed01 Mar 2019 16:05:28WBPerson4055
Remark[131112 pad] Renamed from Bm2434b as this is a single Isoform locus.Curator_confirmedWBPerson1983
[190301 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated