WormBase Tree Display for CDS: OVOC342
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OVOC342 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_7 | |||
Structure | Source_exons | 1 | 123 | |||
310 | 501 | |||||
661 | 840 | |||||
985 | 1116 | |||||
1297 | 1422 | |||||
1554 | 1698 | |||||
1892 | 2009 | |||||
2176 | 2263 | |||||
2770 | 2868 | |||||
2989 | 3090 | |||||
3268 | 3489 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00282 (Pyridoxal-dependent decarboxylase conserved domain); contains similarity to Interpro domains IPR002129 (Pyridoxal phosphate-dependent decarboxylase), IPR010977 (Aromatic-L-amino-acid decarboxylase), IPR015424 (Pyridoxal phosphate-dependent transferase), IPR015421 (Pyridoxal phosphate-dependent transferase, major domain), IPR015422 (Pyridoxal phosphate-dependent transferase, small domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00237151 | ||||
Corresponding_transcript | OVOC342.1 | |||||
Corresponding_protein | OVP13068 | |||||
Matching_cDNA | AW888312 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG626|c192_g8_i9 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Aromatic-L-amino-acid decarboxylase homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 1.90351 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 1.32551 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
4.00388 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
7.26771 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 0.033615 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
0.066182 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140306 es9] Splice sites of OVOC342 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |