WormBase Tree Display for CDS: OVOC3747
expand all nodes | collapse all nodes | view schema
OVOC3747 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_209 | |||
Structure | Source_exons | 1 | 79 | |||
1412 | 1569 | |||||
4207 | 4322 | |||||
15324 | 15398 | |||||
28709 | 28814 | |||||
31302 | 31481 | |||||
35815 | 35954 | |||||
36305 | 36423 | |||||
37025 | 37211 | |||||
37316 | 37490 | |||||
38146 | 38249 | |||||
39188 | 39363 | |||||
39762 | 39872 | |||||
40195 | 40252 | |||||
40701 | 40828 | |||||
41360 | 41582 | |||||
42294 | 42425 | |||||
43183 | 43255 | |||||
43877 | 43997 | |||||
44170 | 44300 | |||||
44590 | 44671 | |||||
44947 | 45073 | |||||
45445 | 45634 | |||||
46050 | 46156 | |||||
46373 | 46478 | |||||
47171 | 47359 | |||||
48570 | 48752 | |||||
49318 | 49452 | |||||
50026 | 50190 | |||||
50718 | 50828 | |||||
51462 | 51662 | |||||
51856 | 51921 | |||||
52448 | 52539 | |||||
52978 | 53143 | |||||
53703 | 53830 | |||||
54323 | 54525 | |||||
54947 | 55054 | |||||
55590 | 55678 | |||||
56937 | 57052 | |||||
58000 | 58093 | |||||
58765 | 58827 | |||||
60212 | 60311 | |||||
60553 | 60640 | |||||
60796 | 60986 | |||||
61365 | 61631 | |||||
62171 | 62397 | |||||
DB_info | DB_remark | OVO-UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR005821 (Ion transport domain), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding (2) | |||||
Visible | Gene | WBGene00240556 | ||||
Corresponding_transcript | OVOC3747.1 | |||||
Corresponding_protein | OVP14484 | |||||
Brief_identification | Voltage-dependent L-type calcium channel subunit alpha-1F homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 2.13073 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 0.688589 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
11.0366 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
13.4785 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 2.06399 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
2.44539 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140422 es9] Merged OVOC3746, OVOC3747, OVOC3748 and OVOC3749 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |