WormBase Tree Display for CDS: OVOC8391
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OVOC8391 | SMap | S_parent | Sequence | OVOC_OM3_75 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 121 | |||
2473 | 2629 | |||||
2842 | 3068 | |||||
3393 | 3512 | |||||
3779 | 3883 | |||||
4116 | 4239 | |||||
4549 | 4706 | |||||
5072 | 5239 | |||||
5401 | 5529 | |||||
5998 | 6121 | |||||
6428 | 6567 | |||||
6757 | 6860 | |||||
7035 | 7227 | |||||
7355 | 7503 | |||||
7742 | 7862 | |||||
8091 | 8224 | |||||
8445 | 8640 | |||||
8934 | 9106 | |||||
9400 | 9556 | |||||
9741 | 9841 | |||||
10101 | 10410 | |||||
10572 | 10687 | |||||
10812 | 11043 | |||||
11232 | 11486 | |||||
11683 | 11817 | |||||
12140 | 12313 | |||||
12441 | 12547 | |||||
12844 | 12993 | |||||
13111 | 13177 | |||||
13470 | 13594 | |||||
13957 | 14074 | |||||
14345 | 14506 | |||||
14633 | 14842 | |||||
15104 | 15275 | |||||
15849 | 16009 | |||||
16250 | 16419 | |||||
16920 | 17052 | |||||
17327 | 17430 | |||||
17608 | 17800 | |||||
18066 | 18154 | |||||
18323 | 18448 | |||||
18633 | 18702 | |||||
18873 | 19027 | |||||
19340 | 25989 | |||||
26165 | 27466 | |||||
27851 | 28026 | |||||
28508 | 30818 | |||||
31099 | 31291 | |||||
31437 | 31627 | |||||
31957 | 32158 | |||||
32476 | 32586 | |||||
32729 | 32871 | |||||
33157 | 33354 | |||||
33567 | 33869 | |||||
34098 | 34242 | |||||
34431 | 34504 | |||||
34789 | 34911 | |||||
35024 | 35146 | |||||
35339 | 35481 | |||||
35883 | 35980 | |||||
36246 | 36456 | |||||
36829 | 37056 | |||||
37392 | 37645 | |||||
38448 | 38540 | |||||
DB_info | DB_remark | OVO-DIG-1 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00047 (Immunoglobulin domain), PF00092 (von Willebrand factor type A domain); contains similarity to Interpro domains IPR036465 (von Willebrand factor A-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR001881 (EGF-like calcium-binding domain), IPR002035 (von Willebrand factor, type A), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000742 (EGF-like domain), IPR013783 (Immunoglobulin-like fold), IPR011041 (Soluble quinoprotein glucose/sorbosone dehydrogenase), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily), IPR013151 (Immunoglobulin) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00245200 | ||||
Corresponding_transcript | OVOC8391.1 | |||||
Corresponding_protein | OVP11296 | |||||
Brief_identification | Mesocentin homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 6.91117 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 2.98578 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
29.8706 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
35.676 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 3.45889 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
9.79025 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |