WormBase Tree Display for CDS: F18C12.2b
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| F18C12.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F18C12 | |||
| Structure | Source_exons (22) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O62178 | ||
| UniProt | UniProtAcc | O62178 | ||||
| AlphaFold | entry | O62178 | ||||
| NCBI_protein | GI_number | GI:19571658 | ||||
| Protein_id | CHROMOSOME_I | CAA99832 | 3 | |||
| DB_remark | RME-8 protein; contains similarity to Pfam domains PF00226 (DnaJ domain), PF14237 (GYF domain 2), PF19432 (DNAJ protein RME-8 N-terminal); contains similarity to Interpro domains IPR044978 (DnaJ homologue subfamily C, GRV2/DNAJC13), IPR001623 (DnaJ domain), IPR045802 (DnaJ homologue subfamily C, GRV2/DNAJC13, N-terminal domain), IPR011989 (Armadillo-like helical), IPR036869 (Chaperone J-domain superfamily), IPR016024 (Armadillo-type fold), IPR025640 (GYF domain 2) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | C62624 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00004378 | ||||
| Corresponding_transcript | F18C12.2b.1 | |||||
| Corresponding_protein | CE30345 | |||||
| Corresponding_PCR_product | WBPaper00038381:F18C12_1_1 | |||||
| cenix:84-b10 | ||||||
| mv_F18C12.2a | ||||||
| mv_F18C12.2b | ||||||
| sjj_F18C12.2 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (53) | ||||||
| RNAi_result (19) | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | J domain-containing protein | Accession_evidence | UniProt | TR:O62178 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 25 Feb 2002 00:00:00 | WBPerson3103 | ||||
| Remark | Annotated using Pfam | |||||
| [010724 kj] Changed 5' end according t gaze prediction to use better splice sites and prevent CeRep overlap. | ||||||
| [020225 kj] Removed intron 9 and 21 according to mRNA AF372457 and publication by Zhang, Grant and Hirsh (Mol Biol Cell 12, 2001). | ||||||
| Method | curated |
