WormBase Tree Display for CDS: R07B5.9c
expand all nodes | collapse all nodes | view schema
| R07B5.9c | SMap | S_parent | Sequence | CHROMOSOME_V | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (15) | |||||
| DB_info | Database | KEGG | KEGG_id | 2.3.1.48 | ||
| SwissProt | UniProtAcc | K8ERR8 | ||||
| UniProtIsoformAcc | K8ERR8-4 | |||||
| UniProt | UniProtAcc | K8ERR8 | ||||
| UniProt_GCRP | UniProtAcc | K8ERR8 | ||||
| AlphaFold | entry | K8ERR8 | ||||
| NCBI_protein | GI_number | GI:313004698 | ||||
| Protein_id | CHROMOSOME_V | CBM41217 | 2 | |||
| DB_remark | LSY-12 protein; contains similarity to Pfam domains PF01853 (MOZ/SAS family), PF17772 (MYST family zinc finger domain); contains similarity to Interpro domains IPR040706 (MYST, zinc finger domain), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR002717 (Histone acetyltransferase domain, MYST-type), IPR016181 (Acyl-CoA N-acyltransferase) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
| Visible | Gene | WBGene00045419 | ||||
| Corresponding_transcript | R07B5.9c.1 | |||||
| Corresponding_protein | CE45237 | |||||
| Corresponding_PCR_product | cenix:113-f1 | |||||
| cenix:20-d7 | ||||||
| cenix:246-d12 | ||||||
| mv_R07B5.8 | ||||||
| mv_T11A5.1 | ||||||
| sjj2_R07B5.8a | ||||||
| sjj_R07B5.8 | ||||||
| sjj_T11A5.1 | ||||||
| smd_T11A5.1 | ||||||
| Corresponding_oligo_set (42) | ||||||
| Matching_cDNA (12) | ||||||
| RNAi_result (16) | ||||||
| Microarray_results (47) | ||||||
| Brief_identification | Histone acetyltransferase lsy-12 | Accession_evidence | UniProt | SP:K8ERR8 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 04 Dec 2012 00:00:00 | WBPerson4025 | ||||
| Remark | [100521 pad] Merged T11A5.1 into lys-12 based on available RNAseq Transcript data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_Hillier_elegans | |||||
| [100726 gw3] Changed the splice site for the intron based on the RNASeq data. | From_analysis | RNASeq_Hillier_elegans | ||||
| Associated_feature | WBsf027759 | |||||
| Method | curated |
