WormBase Tree Display for CDS: T12E12.6
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| T12E12.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | |||
| Structure | Source_exons | 1 | 334 | |||
| 1027 | 1334 | |||||
| 3461 | 3601 | |||||
| 3908 | 4018 | |||||
| 4388 | 4630 | |||||
| 4910 | 5092 | |||||
| 5613 | 5866 | |||||
| 6311 | 6440 | |||||
| 6624 | 6845 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A5A631 | ||
| UniProt | UniProtAcc | A5A631 | ||||
| UniProt_GCRP | UniProtAcc | A5A631 | ||||
| AlphaFold | entry | A5A631 | ||||
| NCBI_protein | GI_number | GI:373219851 | ||||
| TREEFAM | TREEFAM_ID | TF315550 | ||||
| Protein_id | CHROMOSOME_IV | CCD70527 | 1 | |||
| DB_remark | contains similarity to Pfam domains PF01433 (Peptidase family M1 domain), PF17900 (Peptidase M1 N-terminal domain); contains similarity to Interpro domains IPR027268 (Peptidase M4/M1, CTD superfamily), IPR014782 (Peptidase M1, membrane alanine aminopeptidase), IPR042097 (Aminopeptidase N-like , N-terminal domain superfamliy), IPR001930 (Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase), IPR045357 (Aminopeptidase N-like , N-terminal domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00020465 | ||||
| Corresponding_transcript | T12E12.6.1 | |||||
| Corresponding_protein | CE37272 | |||||
| Corresponding_PCR_product | cenix:156-g1 | |||||
| mv_T12E12.6 | ||||||
| sjj_T12E12.6 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | elegans_PE_SS_GG3818|c0_g1_i3 | Inferred_automatically | transcript_builder.pl | |||
| yk1696a02.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1641h05.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3818|c0_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| FM249589 | Inferred_automatically | transcript_builder.pl | ||||
| yk1696a02.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3818|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1400c07.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_206282 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00053218 | |||||
| Microarray_results (18) | ||||||
| Brief_identification | Peptidase_M1 domain-containing protein | Accession_evidence | UniProt | TR:A5A631 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 08 Oct 2013 00:00:00 | WBPerson4025 | ||||
| Remark | this gene may begin in the next cosmid | |||||
| [20040812 tb] extended 5' end based on yk1641h05.5. | Curator_confirmed | WBPerson1849 | ||||
| Method | curated |
