WormBase Tree Display for CDS: T14G10.5a
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T14G10.5a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T14G10 | |||
Structure | Source_exons | 1 | 722 | |||
773 | 880 | |||||
927 | 2061 | |||||
2112 | 2381 | |||||
2432 | 2760 | |||||
3033 | 3081 | |||||
DB_info | Database | SwissProt | UniProtAcc | Q22498 | ||
UniProt | UniProtAcc | Q22498 | ||||
UniProt_GCRP | UniProtAcc | Q22498 | ||||
AlphaFold | entry | Q22498 | ||||
NCBI_protein | GI_number | GI:3879876 | ||||
Protein_id | CHROMOSOME_IV | CAA93095 | 1 | |||
DB_remark | COPG-1 protein; contains similarity to Pfam domains PF01602 (Adaptin N terminal region), PF08752 (Coatomer gamma subunit appendage platform subdomain), PF16381 (Coatomer subunit gamma-1 C-terminal appendage platform); contains similarity to Interpro domains IPR037067 (Coatomer, gamma subunit, appendage domain superfamily), IPR017106 (Coatomer gamma subunit), IPR013040 (Coatomer, gamma subunit, appendage, Ig-like subdomain), IPR011989 (Armadillo-like helical), IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR012295 (TBP domain superfamily), IPR032154 (Coatomer subunit gamma, C-terminal), IPR013041 (Clathrin adaptor, appendage, Ig-like subdomain superfamily), IPR016024 (Armadillo-type fold), IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | BJ807639 | |||
Visible | Gene | WBGene00011775 | ||||
Corresponding_transcript | T14G10.5a.1 | |||||
T14G10.5a.2 | ||||||
Corresponding_protein | CE06451 | |||||
Corresponding_PCR_product | cenix:18-b10 | |||||
mv_T14G10.5 | ||||||
sjj_T14G10.5 | ||||||
smd_T14G10.5 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (122) | ||||||
RNAi_result (16) | ||||||
Microarray_results (21) | ||||||
Brief_identification | Probable coatomer subunit gamma | Accession_evidence | UniProt | SP:Q22498 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 10 Apr 2014 00:00:00 | WBPerson4025 | ||||
Method | curated |