WormBase Tree Display for CDS: T21C12.1o
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| T21C12.1o | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | T21C12 | |||
| Structure | Source_exons | 1 | 58 | |||
| 6319 | 6471 | |||||
| 6962 | 7065 | |||||
| 7112 | 7397 | |||||
| 7942 | 8072 | |||||
| 8176 | 8286 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | U4PBC0 | ||
| UniProt | UniProtAcc | U4PBC0 | ||||
| AlphaFold | entry | U4PBC0 | ||||
| NCBI_protein | GI_number | GI:548948857 | ||||
| Protein_id | CHROMOSOME_III | CDH93147 | 1 | |||
| DB_remark | UNC-49 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR038050 (Neuronal acetylcholine receptor), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf127077 | |||||
| Visible | Gene | WBGene00006784 | ||||
| Corresponding_transcript | T21C12.1o.1 | |||||
| Corresponding_protein | CE48837 | |||||
| Corresponding_PCR_product | TH:323D4 | |||||
| cenix:323-d4 | ||||||
| mv_AAD42382 | ||||||
| mv_AAD42383 | ||||||
| mv_AAD42384 | ||||||
| mv_AAD42385 | ||||||
| mv_AAD42386 | ||||||
| mv_AAD42387 | ||||||
| Corresponding_oligo_set (30) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_12112 | |||||
| L3_Nanopore_Roach_12896 | ||||||
| male_Nanopore_Roach_14574 | ||||||
| L1_Nanopore_Roach_66172 | ||||||
| L1_Nanopore_Roach_45849 | ||||||
| L3_Nanopore_Roach_62709 | ||||||
| L1_Nanopore_Roach_84684 | ||||||
| L2_Nanopore_Roach_46766 | ||||||
| L3_Nanopore_Roach_79071 | ||||||
| L2_Nanopore_Roach_66680 | ||||||
| RNAi_result | WBRNAi00053708 | |||||
| WBRNAi00027895 | ||||||
| WBRNAi00000954 | ||||||
| WBRNAi00006214 | ||||||
| Microarray_results (40) | ||||||
| Brief_identification | Neur_chan_memb domain-containing protein | Accession_evidence | UniProt | TR:U4PBC0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2013 00:00:00 | WBPerson1983 | ||||
| Remark | [130902 pad] This represents a novel SL1 trans-spliced version of T21C12.1f. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf127077 | |||||
| Method | curated |
