WormBase Tree Display for CDS: ZK1151.1n
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| ZK1151.1n | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | CHROMOSOME_I | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A1N7SYQ0 | ||
| UniProt | UniProtAcc | A0A1N7SYQ0 | ||||
| AlphaFold | entry | A0A1N7SYQ0 | ||||
| NCBI_protein | GI_number | GI:1139870812 | ||||
| Protein_id | CHROMOSOME_I | SIT60413 | 1 | |||
| DB_remark | VAB-10 protein; contains similarity to Pfam domains PF00435 (Spectrin repeat), PF02187 (Growth-Arrest-Specific Protein 2 Domain); contains similarity to Interpro domains IPR018159 (Spectrin/alpha-actinin), IPR036534 (GAR domain superfamily), IPR003108 (GAR domain), IPR002017 (Spectrin repeat), IPR011992 (EF-hand domain pair), IPR043197 (Plakin) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf946104 | |||||
| Visible | Gene | WBGene00006876 | ||||
| Corresponding_transcript | ZK1151.1n.1 | |||||
| Corresponding_protein | CE51862 | |||||
| Corresponding_PCR_product | cenix:155-d9 | |||||
| cenix:20-f11 | ||||||
| mv_T08H4.1 | ||||||
| mv_ZK1151.2a | ||||||
| sjj_ZK1151.2 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA (36) | ||||||
| RNAi_result (17) | ||||||
| Microarray_results (24) | ||||||
| Brief_identification | GAR domain-containing protein | Accession_evidence | UniProt | TR:A0A1N7SYQ0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 10 Jan 2017 17:27:40 | WBPerson1983 | ||||
| Remark | [161003 pad] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf946104 | |||||
| From_analysis | RNASeq | |||||
| Method | curated |
