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WormBase Tree Display for CDS: Bm13690

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Name Class

Bm13690EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr1_scaffold_001
StructureSource_exons1159
299475
697832
9711170
12721433
16271794
20522202
25362672
32623474
DB_infoDatabaseKEGGKEGG_id2.3.2.27
TrEMBLUniProtAccA0A0K0IYL2
UniProtUniProtAccA0A0K0IYL2
AlphaFoldentryA0A0K0IYL2
UniProt_GCRPUniProtAccA0A0K0IYL2
Protein_idBm_v4_Chr1_scaffold_001CRZ257441
DB_remarkBMA-PRP-19 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF08606 (Prp19/Pso4-like); contains similarity to Interpro domains IPR003613 (U-box domain), IPR038959 (Pre-mRNA-processing factor 19), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR036322 (WD40-repeat-containing domain superfamily), IPR001680 (WD40 repeat), IPR013915 (Pre-mRNA-splicing factor 19), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00233951
Corresponding_transcriptBm13690.1
Corresponding_proteinBM23638
Matching_cDNAbrugia_GG7570|c4_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG7570|c4_g3_i4Inferred_automaticallytranscript_builder.pl
brugia_GG4820|c0_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG7570|c4_g3_i3Inferred_automaticallytranscript_builder.pl
brugia_GG7570|c4_g3_i1Inferred_automaticallytranscript_builder.pl
brugia_GG7570|c4_g3_i2Inferred_automaticallytranscript_builder.pl
brugia_GG7570|c4_g2_i1Inferred_automaticallytranscript_builder.pl
brugia_GG4820|c0_g1_i2Inferred_automaticallytranscript_builder.pl
Brief_identificationHypothetical 55.2 kDa Trp-Asp repeats containing protein T10F2.4 inchromosome III, putativeAccession_evidenceTIGRBm1_17445
RNASeq_FPKMWBls:000007837.5597From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
42.1247From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
76.1058From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
79.5791From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
82.2843From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
87.39From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
98.6963From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:0000080150.539From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
171.978From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
250.461From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
254.812From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:0000082105.544From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
122.394From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
130.961From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
87.7475From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
96.6598From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (80)
WBls:0000092131.798From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
136.944From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:0000094107.391From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
108.445From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000097113.428From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
130.402From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
192.388From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
208.731From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
252.563From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
318.418From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:0000662155.064From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
182.225From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:0000663128.92From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm13690a as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated