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WormBase Tree Display for CDS: Bm13806

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Name Class

Bm13806EvidenceCurator_confirmedWBPerson615
SMapS_parentSequenceBm_v4_ChrX_scaffold_001
StructureSource_exons (21)
DB_infoDatabaseTrEMBLUniProtAccA0A0H5S0G8
UniProtUniProtAccA0A0H5S0G8
AlphaFoldentryA0A0H5S0G8
UniProt_GCRPUniProtAccA0A0H5S0G8
Protein_idBm_v4_ChrX_scaffold_001CRZ220011
DB_remarkBMA-APA-2 protein; contains similarity to Pfam domains PF01602 (Adaptin N terminal region), PF02296 (Alpha adaptin AP2, C-terminal domain), PF02883 (Adaptin C-terminal domain); contains similarity to Interpro domains IPR017104 (Adaptor protein complex AP-2, alpha subunit), IPR011989 (Armadillo-like helical), IPR002553 (Clathrin/coatomer adaptor, adaptin-like, N-terminal), IPR012295 (TBP domain superfamily), IPR003164 (Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain), IPR013041 (Clathrin adaptor, appendage, Ig-like subdomain superfamily), IPR008152 (Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain), IPR016024 (Armadillo-type fold), IPR009028 (Coatomer/calthrin adaptor appendage, C-terminal subdomain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00234067
Corresponding_transcriptBm13806.1
Corresponding_proteinBM33065
Brief_identificationAlpha-adaptin homolog, putativeAccession_evidenceTIGRBm1_07200
RNASeq_FPKMWBls:000007822.4982From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
24.2349From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
31.8318From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
33.1249From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
35.7191From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
48.3975From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
48.9432From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:000008033.8464From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
35.4625From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
49.8693From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
50.0428From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008223.5028From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
25.7536From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
27.5473From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
41.272From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
44.7756From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009249.1202From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
50.3836From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009425.9771From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
29.2483From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009735.6024From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
37.5314From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
37.8664From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
40.0552From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
46.6466From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
81.7309From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
WBls:000066239.323From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
40.5723From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066318.5249From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20120806 js] this gene is based on RNASeq data and BLASTX alignmentsProtein_id_evidenceWP:CE28680
[131112 pad] Renamed from Bm13806c as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated