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WormBase Tree Display for CDS: Bm2818c

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Name Class

Bm2818cEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (22)
DB_infoDatabaseTrEMBLUniProtAccA0A1I9G3W0
UniProtUniProtAccA0A1I9G3W0
AlphaFoldentryA0A1I9G3W0
Protein_idBm_v4_Chr4_scaffold_001CDP985531
DB_remarkBMA-UBA-1 protein; contains similarity to Pfam domains PF00899 (ThiF family), PF09358 (Ubiquitin fold domain), PF10585 (Ubiquitin-activating enzyme, SCCH domain), PF16190 (Ubiquitin-activating enzyme E1 FCCH domain), PF16191 (Ubiquitin-activating enzyme E1 four-helix bundle); contains similarity to Interpro domains IPR018965 (Ubiquitin-activating enzyme E1, C-terminal), IPR042449 (Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1), IPR032418 (Ubiquitin-activating enzyme E1, FCCH domain), IPR038252 (Ubiquitin-activating enzyme E1, C-terminal domain superfamily), IPR000594 (THIF-type NAD/FAD binding fold), IPR035985 (Ubiquitin-activating enzyme), IPR042302 (Ubiquitin-activating enzyme E1, FCCH domain superfamily), IPR018075 (Ubiquitin-activating enzyme E1), IPR045886 (ThiF/MoeB/HesA family), IPR019572 (Ubiquitin-activating enzyme, SCCH domain), IPR042063 (Ubiquitin-activating enzyme E1, SCCH domain), IPR032420 (Ubiquitin-activating enzyme E1, four-helix bundle), IPR000011 (Ubiquitin/SUMO-activating enzyme E1-like)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
Prediction_statusPartially_confirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00223079
Corresponding_transcriptBm2818c.1
Corresponding_proteinBM49142
Matching_cDNAbrugia_GG5259|c28_g1_i2Inferred_automaticallytranscript_builder.pl
brugia_GG5259|c28_g1_i9Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:00000780.019194From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
0.09641From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
0.356294From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
0.44171From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
1.1666From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
2.60134From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
6.19204From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:00000802.69428From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
4.18614From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
51.8393From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
56.0523From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:00000820.054479From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
0.082491From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
20.199From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
7.31362From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
7.56396From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (79)
WBls:000009211.1813From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
11.5996From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009413.3739From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
31.6265From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000009711.1857From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
3e-06From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
35.2396From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
48.1994From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
55.498From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
7.70761From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:000066227.9729From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
67.3553From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:0000663123.443From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed19 Jul 2019 11:35:04WBPerson4055
Remark[190719 mh6] This structure has been created based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated