WormBase Tree Display for CDS: Bm3404a
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| Bm3404a | Evidence | Curator_confirmed | WBPerson4055 | ||
|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | ||||
| SMap | S_parent | Sequence | Bm_v4_Chr4_scaffold_001 | ||
| Structure | Source_exons (20) | ||||
| DB_info | DB_remark | BMA-EGL-2 protein; contains similarity to Pfam domains PF00027 (Cyclic nucleotide-binding domain), PF00520 (Ion transport protein), PF13426 (PAS domain); contains similarity to Interpro domains IPR003949 (Potassium channel, voltage-dependent, EAG), IPR018490 (Cyclic nucleotide-binding domain superfamily), IPR005821 (Ion transport domain), IPR001610 (PAC motif), IPR000595 (Cyclic nucleotide-binding domain), IPR003938 (Potassium channel, voltage-dependent, EAG/ELK/ERG), IPR000014 (PAS domain), IPR035965 (PAS domain superfamily), IPR014710 (RmlC-like jelly roll fold) | |||
| Origin | From_laboratory | HX | |||
| Species | Brugia malayi | ||||
| Properties | Coding | CDS | |||
| CDS_predicted_by | RATT | ||||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4055 | |||
| Visible | Gene | WBGene00223665 | |||
| Corresponding_transcript | Bm3404a.1 | ||||
| Bm3404a.2 | |||||
| Corresponding_protein | BM34667 | ||||
| Matching_cDNA | brugia_GG6353|c6_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| brugia_GG6353|c14_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| brugia_GG6353|c6_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| brugia_GG6353|c6_g1_i2 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM (10) | |||||
| Last_reviewed | 11 Mar 2019 16:55:42 | WBPerson4055 | |||
| Remark | [131112 pad] Renamed from Bm3404c as this is a single Isoform locus. | Curator_confirmed | WBPerson1983 | ||
| Method | curated |
