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WormBase Tree Display for CDS: Bm5019b

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Name Class

Bm5019bEvidenceCurator_confirmedWBPerson1867
SMapS_parentSequenceBm_v4_Chr2_contig_001
StructureSource_exons (32)
DB_infoDatabaseKEGGKEGG_id5.6.2.2
TrEMBLUniProtAccA0A0K0JH73
UniProtUniProtAccA0A0K0JH73
AlphaFoldentryA0A0K0JH73
Protein_idBm_v4_Chr2_contig_001CDP955451
DB_remarkcontains similarity to Pfam domains PF00204 (DNA gyrase B), PF00521 (DNA gyrase/topoisomerase IV, subunit A), PF01751 (Toprim domain), PF02518 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase), PF16898 (C-terminal associated domain of TOPRIM); contains similarity to Interpro domains IPR002205 (DNA topoisomerase, type IIA, domain A), IPR031660 (C-terminal associated domain of TOPRIM), IPR013506 (DNA topoisomerase, type IIA, subunit B, domain 2), IPR001241 (DNA topoisomerase, type IIA), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036890 (Histidine kinase/HSP90-like ATPase superfamily), IPR013758 (DNA topoisomerase, type IIA, domain A, alpha-beta), IPR013757 (DNA topoisomerase, type IIA, alpha-helical domain superfamily), IPR003594 (Histidine kinase/HSP90-like ATPase), IPR013759 (DNA topoisomerase, type IIA, subunit B, C-terminal), IPR006171 (TOPRIM domain), IPR001154 (DNA topoisomerase II, eukaryotic-type), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR013760 (DNA topoisomerase, type IIA-like domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusPartially_confirmed
IsoformInferred_automaticallyxace
VisibleGeneWBGene00225280
Corresponding_transcriptBm5019b.1
Corresponding_proteinBM24450
Brief_identificationProbable DNA topoisomerase II, putativeAccession_evidenceTIGRBm1_46835
RNASeq_FPKMWBls:00000780.000189From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
0.722402From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
1.46796From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
1.54966From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
2.5e-05From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
5e-05From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
6e-06From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
WBls:00000800.000204From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
0.00054From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
0.006197From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
0.009061From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:00000820.000201From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
0.000945From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
24.1852From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
25.799From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
25.8307From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (80)
WBls:00000920.000404From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
0.000756From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009474.5074From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
84.163From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970.000188From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
23.0373From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
23.7595From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
24.7134From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
44.2822From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
6.22699From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:000066278.8123From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
80.7155From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:0000663120.28From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Methodcurated