WormBase Tree Display for CDS: CBG01041
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| CBG01041 | SMap | S_parent | Sequence | cb25.fpc0022b | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 152 | ||
| 209 | 883 | ||||
| 934 | 1066 | ||||
| 1107 | 1531 | ||||
| 1575 | 2241 | ||||
| 2283 | 2606 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8WP15 | |
| UniProtId | A8WP15_CAEBR | ||||
| TrEMBL | UniProtAcc | A8WP15 | |||
| UniProt_GCRP | UniProtAcc | A8WP15 | |||
| TREEFAM | TREEFAM_ID | TF314872 | |||
| Protein_id | cb25.fpc0022b | CAP22221 | 2 | ||
| DB_remark | contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF08625 (Utp13 specific WD40 associated domain); contains similarity to Interpro domains IPR036322 (WD40-repeat-containing domain superfamily), IPR011047 (Quinoprotein alcohol dehydrogenase-like superfamily), IPR001680 (WD40 repeat), IPR013934 (U3 small nucleolar RNA-associated protein 13, C-terminal), IPR020472 (G-protein beta WD-40 repeat), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00024333 | |||
| Corresponding_transcript | CBG01041.1 | ||||
| Corresponding_protein | CBP00230 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00024333_A | ||||
| GPL8303_CB6_WBGene00024333_B | |||||
| GPL14143_CBG01041_2102-2161_0.778_39_C | |||||
| GPL14143_CBG01041_2205-2264_0.792_18_A | |||||
| GPL14143_CBG01041_2334-2393_0.767_62_B | |||||
| Matching_cDNA | R03912 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG6683|c0_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00024333_A | ||||
| GPL8303_CB6_WBGene00024333_B | |||||
| GPL14143_CBG01041_2102-2161_0.778_39_C | |||||
| GPL14143_CBG01041_2205-2264_0.792_18_A | |||||
| GPL14143_CBG01041_2334-2393_0.767_62_B | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:16 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to Y53C12B.1 by best mutual match (eval=0) ; Ortholog Y53C12B.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP00230 ; Gene WBGene00024333 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrII.briggsae.jigsaw.25 | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG6683|c0_g2_i1-chrII-1'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
