CBG10154 | SMap | S_parent | Sequence | cb25.fpc2234 |
| Structure | Source_exons | 1 | 126 |
| | | 180 | 458 |
| | | 502 | 1232 |
| | | 1458 | 2108 |
| | | 2156 | 2741 |
| DB_info | Database | UniProt | UniProtAcc | A8XAI1 |
| | | | UniProtId | A8XAI1_CAEBR |
| | | KEGG | KEGG_id | 1.17.4.1 |
| | | TrEMBL | UniProtAcc | A8XAI1 |
| | | UniProt_GCRP | UniProtAcc | A8XAI1 |
| | | TREEFAM | TREEFAM_ID | TF300578 |
| | Protein_id | cb25.fpc2234 | CAP29649 | 1 |
| | DB_remark | CBR-RNR-1 protein; contains similarity to Pfam domains PF00317 (Ribonucleotide reductase, all-alpha domain), PF02867 (Ribonucleotide reductase, barrel domain), PF03477 (ATP cone domain); contains similarity to Interpro domains IPR013509 (Ribonucleotide reductase large subunit, N-terminal), IPR013346 (Ribonucleotide reductase, class I, alpha subunit, C-terminal), IPR005144 (ATP-cone domain), IPR000788 (Ribonucleotide reductase large subunit, C-terminal), IPR039718 (Ribonucleoside-diphosphate reductase large subunit), IPR008926 (Ribonucleotide reductase R1 subunit, N-terminal) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00031617 |
| | Corresponding_transcript | CBG10154.1 |
| | Corresponding_protein | CBP02447 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00031617_A |
| | | GPL8303_CB6_WBGene00031617_B |
| | | GPL14143_CBG10154_2013-2072_0.944_3_C |
| | | GPL14143_CBG10154_2138-2197_0.938_5_B |
| | | GPL14143_CBG10154_2187-2246_0.926_7_A |
| | Matching_cDNA | briggsae_GG5323|c7_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | | R05071 | Inferred_automatically | transcript_builder.pl |
| | | R05093 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00031617_A |
| | | GPL8303_CB6_WBGene00031617_B |
| | | GPL14143_CBG10154_2013-2072_0.944_3_C |
| | | GPL14143_CBG10154_2138-2197_0.938_5_B |
| | | GPL14143_CBG10154_2187-2246_0.926_7_A |
| | RNASeq_FPKM | WBls:0000002 | 178.635 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 187.362 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | | 215.569 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 61.2865 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | WBls:0000003 | 502.522 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 561.669 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | 595.912 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | WBls:0000004 | 154.078 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 159.371 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 161.357 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 162.564 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | | 171.132 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | WBls:0000024 | 10.9432 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 12.56 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 21.7231 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 31.4817 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 31.8559 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 61.4471 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 62.1508 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 69.6612 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 70.5725 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 8.80461 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | WBls:0000027 | 25.8552 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 47.1802 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 59.2546 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 9.15244 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | WBls:0000035 | 45.861 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 36.0302 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 37.7236 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 40.6692 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 46.7509 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | WBls:0000041 | 334.323 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 350.759 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 360.43 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 43.8644 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 44.0059 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 63.9895 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | WBls:0000063 | 107.872 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 108.374 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 112.939 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 113.389 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 156.356 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 160.028 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | Last_reviewed | 31 Aug 2016 10:21:18 | WBPerson4025 |
| | Remark | [gffnote] orthologous to T23G5.1 by best mutual match (eval=0) ; Ortholog T23G5.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP02447 ; Gene WBGene00031617 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrIII.briggsae.jigsaw.1111 |
| | | [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG5323|c7_g1_i1-chrIII-1'. | Curator_confirmed | WBPerson4025 |
| Method | curated |