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WormBase Tree Display for CDS: CBG13773

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Name Class

CBG13773SMapS_parentSequencecb25.fpc3752a
StructureSource_exons1249
8991234
18442317
31844264
49165009
50565170
DB_infoDatabaseUniProtUniProtAccA8XIN7
UniProtIdA8XIN7_CAEBR
KEGGKEGG_id6.1.1.18
TrEMBLUniProtAccA8XIN7
UniProt_GCRPUniProtAccA8XIN7
TREEFAMTREEFAM_IDTF105683
Protein_idcb25.fpc3752aCAP325121
DB_remarkCBR-QARS-1 protein; contains similarity to Pfam domains PF00749 (tRNA synthetases class I (E and Q), catalytic domain), PF03950 (tRNA synthetases class I (E and Q), anti-codon binding domain), PF04557 (Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2), PF04558 (Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1); contains similarity to Interpro domains IPR020056 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal), IPR007639 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal), IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR004514 (Glutamine-tRNA synthetase), IPR020059 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain), IPR020058 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain), IPR011035 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily), IPR007638 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR042559 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2), IPR042558 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00034482
Corresponding_transcriptCBG13773.1
Corresponding_proteinCBP03354
Corresponding_oligo_setGPL8303_CB6_WBGene00034482_A
GPL8303_CB6_WBGene00034482_B
GPL14143_CBG13773_1070-1129_0.760_148_B
GPL14143_CBG13773_1230-1289_0.878_20_A
GPL14143_CBG13773_2079-2138_0.918_4_C
Matching_cDNAbriggsae_GG7233|c0_g1_i1Inferred_automaticallytranscript_builder.pl
briggsae_GG7233|c0_g2_i1Inferred_automaticallytranscript_builder.pl
R04098Inferred_automaticallytranscript_builder.pl
briggsae_GG7233|c0_g3_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00034482_A
GPL8303_CB6_WBGene00034482_B
GPL14143_CBG13773_1070-1129_0.760_148_B
GPL14143_CBG13773_1230-1289_0.878_20_A
GPL14143_CBG13773_2079-2138_0.918_4_C
RNASeq_FPKMWBls:000000226.8965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
32.9784From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
56.0923From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
66.4811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
WBls:000000327.6829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
35.8186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
47.3387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
WBls:000000431.9554From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
33.3266From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
33.8658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
34.0705From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
37.6414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:000002427.1114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
28.5456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
34.1385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
36.5304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
41.4548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
42.9111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
49.6171From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
57.966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
65.6719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
66.016From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
WBls:000002720.8347From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
34.0137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
46.1731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.47699From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
WBls:000003551.4083From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003842.1306From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
49.5501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
56.4526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
59.8326From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:000004154.8858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
63.1443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
64.612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
79.4926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
86.0642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
89.8881From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
WBls:000006359.2902From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
60.1015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
65.6037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
66.7468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
73.3495From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
85.4316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
Last_reviewed31 Aug 2016 10:21:20WBPerson4025
Remark[gffnote] orthologous to Y41E3.4 by best mutual match (eval=0) ; Ortholog Y41E3.4 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP03354 ; Gene WBGene00034482
[20080722 tb] Modified based on Jigsaw gene ContigchrIV.briggsae.jigsaw.215
[160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG7233|c0_g3_i1-chrIV-1b.extended'.Curator_confirmedWBPerson4025
Methodcurated