WormBase Tree Display for CDS: CBG19042a
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| CBG19042a | SMap | S_parent | Sequence | cb25.fpc4126 | |
|---|---|---|---|---|---|
| Structure | Source_exons (44) | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XUM8 | |
| UniProtId | A8XUM8_CAEBR | ||||
| DB_remark | CBR-UNC-68 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF00622 (SPRY domain), PF01365 (RIH domain), PF02026 (RyR domain), PF02815 (MIR domain), PF06459 (Ryanodine Receptor TM 4-6), PF08454 (RyR and IP3R Homology associated), PF08709 (Inositol 1,4,5-trisphosphate/ryanodine receptor), PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR014821 (Inositol 1,4,5-trisphosphate/ryanodine receptor), IPR011992 (EF-hand domain pair), IPR002048 (EF-hand domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR035910 (RyR/IP3 receptor binding core, RIH domain superfamily), IPR036300 (Mir domain superfamily), IPR009460 (Ryanodine Receptor TM 4-6), IPR005821 (Ion transport domain), IPR003032 (Ryanodine receptor Ryr), IPR013662 (RyR/IP3R Homology associated domain), IPR000699 (RIH domain), IPR043136 (B30.2/SPRY domain superfamily), IPR003877 (SPRY domain), IPR013333 (Ryanodine receptor), IPR016093 (MIR motif) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00038324 | |||
| Corresponding_transcript | CBG19042a.1 | ||||
| Corresponding_protein | CBP49080 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00038324_A | ||||
| GPL14143_CBG19042_19470-19529_0.918_9_B | |||||
| GPL14143_CBG19042_19528-19587_0.940_2_C | |||||
| GPL14143_CBG19042_19631-19690_0.931_3_A | |||||
| Matching_cDNA | briggsae_GG1972|c5_g2_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG1972|c5_g4_i1 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG1972|c5_g1_i14 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00038324_A | ||||
| GPL14143_CBG19042_19470-19529_0.918_9_B | |||||
| GPL14143_CBG19042_19528-19587_0.940_2_C | |||||
| GPL14143_CBG19042_19631-19690_0.931_3_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 23 Apr 2018 15:52:46 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to K11C4.5 by best mutual match (eval=0) ; Ortholog K11C4.5 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP11046 ; Gene WBGene00038324 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrV.briggsae.jigsaw.2571 | |||||
| [20080722 tb] Merged CBG19044 into this gene | |||||
| [180423 gw3] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | ||||
| Method | curated |
