WormBase Tree Display for CDS: CBG21923a
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| CBG21923a | SMap | S_parent | Sequence | cb25.fpc4292a | |
|---|---|---|---|---|---|
| Structure | Source_exons (10) | ||||
| DB_info | Database | UniProt | UniProtAcc | A8Y178 | |
| UniProtId | A8Y178_CAEBR | ||||
| DB_remark | CBR-UNC-14 protein; contains similarity to Pfam domain PF02759 (RUN domain); contains similarity to Interpro domains IPR037213 (RUN domain superfamily), IPR004012 (RUN domain) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Visible | Gene | WBGene00040592 | |||
| Corresponding_transcript | CBG21923a.1 | ||||
| Corresponding_protein | CBP30334 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00040592_A | ||||
| GPL14143_CBG21923_928-987_0.674_96_A | |||||
| GPL14143_CBG21923_1664-1723_0.599_159_C | |||||
| GPL14143_CBG21923_1950-2009_0.799_5_B | |||||
| Matching_cDNA | briggsae_GG4345|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL8303_CB6_WBGene00040592_A | ||||
| GPL14143_CBG21923_928-987_0.674_96_A | |||||
| GPL14143_CBG21923_1664-1723_0.599_159_C | |||||
| GPL14143_CBG21923_1950-2009_0.799_5_B | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:13 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to K10D3.2 by best mutual match (eval=0) ; Ortholog K10D3.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05206 ; Gene WBGene00040592 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrII.briggsae.jigsaw.272 | |||||
| [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG4345|c0_g1_i1-chrI-1'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
