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WormBase Tree Display for CDS: CBN00649

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Name Class

CBN00649SMapS_parentSequenceCbre_Contig2
StructureSource_exons181
130312
368502
547627
6741197
12451362
14111772
18162095
DB_infoDatabaseTREEFAMTREEFAM_IDTF320698
DB_remarkCBN-TBH-1 protein; contains similarity to Pfam domains PF01082 (Copper type II ascorbate-dependent monooxygenase, N-terminal domain), PF03351 (DOMON domain), PF03712 (Copper type II ascorbate-dependent monooxygenase, C-terminal domain); contains similarity to Interpro domains IPR008977 (PHM/PNGase F domain superfamily), IPR028460 (Tyramine beta-hydroxylase/Dopamine beta-hydroxylase), IPR000323 (Copper type II, ascorbate-dependent monooxygenase, N-terminal), IPR005018 (DOMON domain), IPR036939 (Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily), IPR024548 (Copper type II ascorbate-dependent monooxygenase, C-terminal), IPR014784 (Copper type II, ascorbate-dependent monooxygenase-like, C-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00139374
Corresponding_transcriptCBN00649.1
Corresponding_proteinCN15929
Corresponding_oligo_setGPL14142_CBN00649_1154-1213_0.913_32_C
GPL14142_CBN00649_1341-1400_0.940_8_A
GPL14142_CBN00649_1421-1480_0.942_6_B
Matching_cDNAFD511009Inferred_automaticallytranscript_builder.pl
FF083169Inferred_automaticallytranscript_builder.pl
FF083170Inferred_automaticallytranscript_builder.pl
FF084521Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN00649_1154-1213_0.913_32_C
GPL14142_CBN00649_1341-1400_0.940_8_A
GPL14142_CBN00649_1421-1480_0.942_6_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.4028From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
14.1427From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
28.2371From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
2.93013From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
3.10066From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
4.37855From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
5.45356From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
6.65719From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040.651113From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
1.18221From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
1.2863From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
1.81225From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
2.35392From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
3.06441From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000380.927512From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
1.2376From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
RemarkContig1082.brenneri.jigsaw.3.mRNA3
Methodcurated