Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CBN04050

expand all nodes | collapse all nodes | view schema

Name Class

CBN04050SMapS_parentSequenceCbre_Contig2
StructureSource_exons188
137298
647854
905989
10381173
12221546
16771812
DB_infoDatabaseTREEFAMTREEFAM_IDTF300739
DB_remarkCBN-ERV-46 protein; contains similarity to Pfam domains PF07970 (Endoplasmic reticulum vesicle transporter), PF13850 (Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)); contains similarity to Interpro domains IPR039542 (Endoplasmic reticulum vesicle transporter, N-terminal), IPR012936 (Endoplasmic reticulum vesicle transporter, C-terminal)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00142775
Corresponding_transcriptCBN04050.1
Corresponding_proteinCN24973
Corresponding_oligo_setGPL14142_CBN04050_1079-1138_0.970_1_A
GPL14142_CBN04050_389-448_0.895_22_C
GPL14142_CBN04050_819-878_0.955_5_B
Microarray_resultsGPL14142_CBN04050_389-448_0.895_22_C
GPL14142_CBN04050_819-878_0.955_5_B
GPL14142_CBN04050_1079-1138_0.970_1_A
RNASeq_FPKMWBls:00000020.7083From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0.866516From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.05843From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.31829From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
1.89164From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
2.09867From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
2.11156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
7.54426From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:0000004105.092From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
10.9172From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
15.9819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
16.5034From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
18.6907From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
25.5305From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
32.0472From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003831.881From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
37.7611From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
RemarkContig38.brenneri.jigsaw.70.mRNA70
Methodcurated