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WormBase Tree Display for CDS: CBN04765

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Name Class

CBN04765SMapS_parentSequenceCbre_Contig2
StructureSource_exons1106
154347
396575
747908
9671191
14031704
17532200
DB_infoDatabaseTREEFAMTREEFAM_IDTF300905
DB_remarkCBN-SUOX-1 protein; contains similarity to Pfam domains PF00173 (Cytochrome b5-like Heme/Steroid binding domain), PF00174 (Oxidoreductase molybdopterin binding domain), PF03404 (Mo-co oxidoreductase dimerisation domain); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR036400 (Cytochrome b5-like heme/steroid binding domain superfamily), IPR008335 (Eukaryotic molybdopterin oxidoreductase), IPR036374 (Oxidoreductase, molybdopterin-binding domain superfamily), IPR001199 (Cytochrome b5-like heme/steroid binding domain), IPR000572 (Oxidoreductase, molybdopterin-binding domain), IPR005066 (Moybdenum cofactor oxidoreductase, dimerisation)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00143490
Corresponding_transcriptCBN04765.1
Corresponding_proteinCN15508
Corresponding_oligo_setGPL14142_CBN04765_1436-1495_0.934_12_C
GPL14142_CBN04765_1533-1592_0.964_2_B
GPL14142_CBN04765_1544-1603_0.978_1_A
Microarray_resultsGPL14142_CBN04765_1436-1495_0.934_12_C
GPL14142_CBN04765_1533-1592_0.964_2_B
GPL14142_CBN04765_1544-1603_0.978_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.72395From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
1.75628From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.8789From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
3.15864From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
3.47944From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
4.20099From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.37127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
8.8389From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000044.75594From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
62.8811From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
13.2693From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
15.6753From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
16.6707From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
19.2613From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
20.5951From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003815.2814From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
19.882From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (16)
RemarkContig1082.brenneri.jigsaw.4.mRNA4
Methodcurated