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WormBase Tree Display for CDS: CBN04781

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Name Class

CBN04781SMapS_parentSequenceCbre_Contig28
StructureSource_exons1149
17511911
19592118
22222328
25432947
33483722
1169611831
1188412271
1239112456
DB_infoDatabaseTREEFAMTREEFAM_IDTF315501
DB_remarkCBN-MAB-10 protein; contains similarity to Pfam domains PF04904 (NAB conserved region 1 (NCD1)), PF04905 (NAB conserved region 2 (NCD2)); contains similarity to Interpro domains IPR006988 (Nab, N-terminal), IPR039040 (NAB family), IPR006989 (NAB co-repressor, domain), IPR038398 (NAB co-repressor domain 2 superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00143506
Corresponding_transcriptCBN04781.1
Corresponding_proteinCN30484
Corresponding_oligo_setGPL14142_CBN04781_1309-1368_0.764_130_C
GPL14142_CBN04781_1383-1442_0.755_141_B
GPL14142_CBN04781_1584-1643_0.912_11_A
Microarray_resultsGPL14142_CBN04781_1309-1368_0.764_130_C
GPL14142_CBN04781_1383-1442_0.755_141_B
GPL14142_CBN04781_1584-1643_0.912_11_A
RNASeq_FPKMWBls:00000020.709031From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.42437From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.51425From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
1.69313From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
1.90477From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
3.11084From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.26234From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
3.4156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.98167From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240.929475From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
1.23678From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
1.31779From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
1.33766From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
2.68935From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:0000038104.5From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
99.9631From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
Remark[20081101 mh] original nGASP gene : Contig345.brenneri.jigsaw.11.mRNA11
[20081113 db] corrected translation frame of this protein
Methodcurated