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WormBase Tree Display for CDS: CBN06666

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Name Class

CBN06666SMapS_parentSequenceCbre_Contig28
StructureSource_exons174
122368
5051008
DB_infoDatabaseTREEFAMTREEFAM_IDTF105603
DB_remarkCBN-DPH-5 protein; contains similarity to Pfam domain PF00590 (Tetrapyrrole (Corrin/Porphyrin) Methylases); contains similarity to Interpro domains IPR014777 (Tetrapyrrole methylase, subdomain 1), IPR004551 (Diphthine synthase), IPR000878 (Tetrapyrrole methylase), IPR014776 (Tetrapyrrole methylase, subdomain 2), IPR035996 (Tetrapyrrole methylase superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00145391
Corresponding_transcriptCBN06666.1
Corresponding_proteinCN08095
Corresponding_oligo_setGPL14142_CBN06666_430-489_0.932_9_C
GPL14142_CBN06666_623-682_0.963_1_B
GPL14142_CBN06666_670-729_0.950_5_A
Matching_cDNAFF086449Inferred_automaticallytranscript_builder.pl
FF086726Inferred_automaticallytranscript_builder.pl
FF093011Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN06666_430-489_0.932_9_C
GPL14142_CBN06666_623-682_0.963_1_B
GPL14142_CBN06666_670-729_0.950_5_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
11.8636From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
12.7001From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
14.7101From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
15.8354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
18.7257From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
6.37417From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
6.49833From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
9.44321From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
9.46379From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
24.4373From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
32.3916From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
33.8492From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
34.1447From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
37.7633From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003829.8611From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
36.5778From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.7.mRNA7
Methodcurated