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WormBase Tree Display for CDS: CBN06804

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Name Class

CBN06804SMapS_parentSequenceCbre_Contig2
StructureSource_exons (21)
DB_infoDatabaseTREEFAMTREEFAM_IDTF321873
DB_remarkCBN-ATRN-1 protein; contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF00431 (CUB domain), PF01344 (Kelch motif), PF01437 (Plexin repeat), PF13854 (Kelch motif); contains similarity to Interpro domains IPR011043 (Galactose oxidase/kelch, beta-propeller), IPR002165 (Plexin repeat), IPR000742 (EGF-like domain), IPR035914 (Spermadhesin, CUB domain superfamily), IPR002049 (Laminin-type EGF domain), IPR000859 (CUB domain), IPR006652 (Kelch repeat type 1), IPR016201 (PSI domain), IPR015915 (Kelch-type beta propeller)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00145529
Corresponding_transcriptCBN06804.1
Corresponding_proteinCN07419
Corresponding_oligo_setGPL14142_CBN06804_2429-2488_0.821_52_B
GPL14142_CBN06804_2956-3015_0.882_15_C
GPL14142_CBN06804_3052-3111_0.680_368_A
Microarray_resultsGPL14142_CBN06804_2429-2488_0.821_52_B
GPL14142_CBN06804_2956-3015_0.882_15_C
GPL14142_CBN06804_3052-3111_0.680_368_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
12.0912From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
2.69723From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
2.88018From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
3.62297From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
4.43224From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
4.74112From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
5.54922From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
5.63572From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
WBls:0000004150.111From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
15.4844From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
12.3938From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
15.4759From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
15.6692From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
17.3967From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
18.282From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003824.1572From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
26.4199From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
RemarkContig11.brenneri.jigsaw.125.mRNA125
Methodcurated