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WormBase Tree Display for CDS: CBN08102

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Name Class

CBN08102SMapS_parentSequenceCbre_Contig330
StructureSource_exons191
25482627
62316373
65046804
95379786
1235512504
1276413546
1429114895
1524616055
DB_infoDB_remarkcontains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF01404 (Ephrin receptor ligand binding domain), PF07714 (Protein tyrosine and serine/threonine kinase), PF14575 (Ephrin type-A receptor 2 transmembrane domain); contains similarity to Interpro domains IPR003961 (Fibronectin type III), IPR011009 (Protein kinase-like domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR016257 (Ephrin receptor type-A /type-B), IPR008979 (Galactose-binding-like domain superfamily), IPR011641 (Tyrosine-protein kinase ephrin type A/B receptor-like), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR001090 (Ephrin receptor ligand binding domain), IPR027936 (Ephrin receptor, transmembrane domain), IPR036116 (Fibronectin type III superfamily), IPR020635 (Tyrosine-protein kinase, catalytic domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00146827
Corresponding_transcriptCBN08102.1
Corresponding_proteinCN02565
Corresponding_oligo_setGPL14142_CBN08102_2269-2328_0.865_28_C
GPL14142_CBN08102_2362-2421_0.895_9_B
GPL14142_CBN08102_2511-2570_0.704_208_A
Microarray_resultsGPL14142_CBN08102_2269-2328_0.865_28_C
GPL14142_CBN08102_2362-2421_0.895_9_B
GPL14142_CBN08102_2511-2570_0.704_208_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.43546From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
1.64411From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
1.96302From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
2.02627From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
2.66585From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.05256From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
4.0599From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
5.30813From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
15.0473From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
2.96009From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
3.19347From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
4.50776From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
5.52103From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
5.59983From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000384.23902From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
4.32868From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig590.brenneri.jigsaw.5.mRNA5
Methodcurated