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WormBase Tree Display for CDS: CBN12233

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Name Class

CBN12233SMapS_parentSequenceCbre_Contig28
StructureSource_exons1204
253419
467740
DB_infoDatabaseTREEFAMTREEFAM_IDTF315920
DB_remarkCBN-CRN-5 protein; contains similarity to Pfam domains PF01138 (3' exoribonuclease family, domain 1), PF03725 (3' exoribonuclease family, domain 2); contains similarity to Interpro domains IPR015847 (Exoribonuclease, phosphorolytic domain 2), IPR001247 (Exoribonuclease, phosphorolytic domain 1), IPR036345 (Exoribonuclease, PH domain 2 superfamily), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR027408 (PNPase/RNase PH domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00150958
Corresponding_transcriptCBN12233.1
Corresponding_proteinCN27496
Corresponding_oligo_setGPL14142_CBN12233_307-366_0.943_1_A
GPL14142_CBN12233_406-465_0.927_9_B
GPL14142_CBN12233_586-645_0.928_5_C
Matching_cDNAFF081429Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN12233_307-366_0.943_1_A
GPL14142_CBN12233_406-465_0.927_9_B
GPL14142_CBN12233_586-645_0.928_5_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.418From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
2.21878From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
2.99536From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.57497From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
6.71405From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
7.97607From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
9.16112From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
9.59957From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
24.893From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
11.7977From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
17.1009From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
23.5005From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
26.4282From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
28.686From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003820.1825From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
22.2857From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (14)
Remark[20081101 mh] original nGASP gene : Contig345.brenneri.jigsaw.28.mRNA28
[20081113 db] corrected translation frame of this protein
Methodcurated