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WormBase Tree Display for CDS: CBN12633

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Name Class

CBN12633SMapS_parentSequenceCbre_Contig28
StructureSource_exons179
352472
527998
10481362
14151793
18442049
DB_infoDatabaseTREEFAMTREEFAM_IDTF300854
DB_remarkCBN-CYN-4 protein; contains similarity to Pfam domains PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD), PF04641 (Rtf2 RING-finger); contains similarity to Interpro domains IPR003613 (U-box domain), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR027799 (Replication termination factor 2, RING-finger), IPR029000 (Cyclophilin-like domain superfamily), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00151358
Corresponding_transcriptCBN12633.1
Corresponding_proteinCN17983
Corresponding_oligo_setGPL14142_CBN12633_1072-1131_0.910_11_C
GPL14142_CBN12633_1178-1237_0.894_17_B
GPL14142_CBN12633_1428-1487_0.950_1_A
Matching_cDNAFD510729Inferred_automaticallytranscript_builder.pl
FD511610Inferred_automaticallytranscript_builder.pl
FF098455Inferred_automaticallytranscript_builder.pl
FF102539Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN12633_1072-1131_0.910_11_C
GPL14142_CBN12633_1178-1237_0.894_17_B
GPL14142_CBN12633_1428-1487_0.950_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
19.0582From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
19.9525From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
22.1495From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
26.0405From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
26.6814From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
28.2498From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
29.9027From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
39.1587From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
53.2265From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
25.8178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
27.8544From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
27.929From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
30.5453From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
30.9343From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003829.1068From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
33.5385From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.85.mRNA85
Methodcurated