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WormBase Tree Display for CDS: CBN13151

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Name Class

CBN13151SMapS_parentSequenceCbre_Contig28
StructureSource_exons1313
3581243
12921391
DB_infoDB_remarkCBN-NEP-1.2 protein; contains similarity to Pfam domains PF01431 (Peptidase family M13), PF05649 (Peptidase family M13); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR018497 (Peptidase M13, C-terminal domain), IPR000718 (Peptidase M13), IPR008753 (Peptidase M13, N-terminal domain)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
Start_not_found1
VisibleGeneWBGene00151876
Corresponding_transcriptCBN13151.1
Corresponding_proteinCN04300
Corresponding_oligo_setGPL14142_CBN13151_1051-1110_0.955_1_A
GPL14142_CBN13151_1239-1298_0.954_2_C
GPL14142_CBN13151_875-934_0.917_18_B
Matching_cDNAFF081367Inferred_automaticallytranscript_builder.pl
FF081597Inferred_automaticallytranscript_builder.pl
FF083777Inferred_automaticallytranscript_builder.pl
FF091525Inferred_automaticallytranscript_builder.pl
FF092084Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN13151_875-934_0.917_18_B
GPL14142_CBN13151_1051-1110_0.955_1_A
GPL14142_CBN13151_1239-1298_0.954_2_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
19.2333From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
21.3438From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
24.654From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
25.7674From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
35.125From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
35.296From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
38.4085From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
45.7424From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
183.255From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
10.3466From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
10.4287From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
13.6756From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
14.0245From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
14.2862From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003859.6492From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
60.3555From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkMissing+from+liftover:+5UTR,CDS.4
Methodcurated