Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CBN15441

expand all nodes | collapse all nodes | view schema

Name Class

CBN15441SMapS_parentSequenceCbre_Contig28
StructureSource_exons1210
294527
575985
11281291
13431664
19972095
DB_infoDatabaseTREEFAMTREEFAM_IDTF300381
DB_remarkCBN-NUO-1 protein; contains similarity to Pfam domains PF01512 (Respiratory-chain NADH dehydrogenase 51 Kd subunit), PF10531 (SLBB domain), PF10589 (NADH-ubiquinone oxidoreductase-F iron-sulfur binding region); contains similarity to Interpro domains IPR011537 (NADH ubiquinone oxidoreductase, F subunit), IPR037225 (NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily), IPR011538 (NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain), IPR019554 (Soluble ligand binding domain), IPR019575 (NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain), IPR037207 (NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00154166
Corresponding_transcriptCBN15441.1
Corresponding_proteinCN06956
Corresponding_oligo_setGPL14142_CBN15441_1079-1138_0.923_11_C
GPL14142_CBN15441_1286-1345_0.942_3_B
GPL14142_CBN15441_1383-1442_0.917_14_A
Matching_cDNAEU677738Inferred_automaticallytranscript_builder.pl
FD511435Inferred_automaticallytranscript_builder.pl
FF081772Inferred_automaticallytranscript_builder.pl
FF083812Inferred_automaticallytranscript_builder.pl
FF095418Inferred_automaticallytranscript_builder.pl
FF101214Inferred_automaticallytranscript_builder.pl
FF102488Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN15441_1079-1138_0.923_11_C
GPL14142_CBN15441_1286-1345_0.942_3_B
GPL14142_CBN15441_1383-1442_0.917_14_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
103.275From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
106.896From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
114.628From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
145.467From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
149.527From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
59.5164From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
93.3442From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
98.5253From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
88.0466From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
175.111From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
183.393From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
197.201From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
232.862From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
233.399From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:0000038263.132From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
279.994From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.62.mRNA62
Methodcurated