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WormBase Tree Display for CDS: CBN17931

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Name Class

CBN17931SMapS_parentSequenceCbre_Contig0
StructureSource_exons (12)
DB_infoDatabaseTREEFAMTREEFAM_IDTF313593
DB_remarkCBN-CTBP-1 protein; contains similarity to Pfam domains PF00389 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), PF02826 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain); contains similarity to Interpro domains IPR006140 (D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain), IPR038441 (THAP-type zinc finger superfamily), IPR006139 (D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain), IPR036291 (NAD(P)-binding domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00156656
Corresponding_transcriptCBN17931.1
Corresponding_proteinCN01367
Corresponding_oligo_setGPL14142_CBN17931_1147-1206_0.900_19_A
GPL14142_CBN17931_1192-1251_0.862_36_B
GPL14142_CBN17931_1405-1464_0.731_167_C
Microarray_resultsGPL14142_CBN17931_1147-1206_0.900_19_A
GPL14142_CBN17931_1192-1251_0.862_36_B
GPL14142_CBN17931_1405-1464_0.731_167_C
RNASeq_FPKMWBls:00000020.325441From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0.51809From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0.695032From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
0.869131From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.04913From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
1.56774From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
2.05472From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
2.13914From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
WBls:00000041.93778From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
26.0856From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
11.6017From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
12.3925From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
12.8917From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
14.8141From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
17.0626From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000382.76334From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
3.30728From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (13)
RemarkContig0.brenneri.jigsaw.207.mRNA207
Methodcurated