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WormBase Tree Display for CDS: CBN18184

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Name Class

CBN18184SMapS_parentSequenceCbre_Contig2
StructureSource_exons1346
9342012
20602308
23822831
DB_infoDatabaseTREEFAMTREEFAM_IDTF300458
DB_remarkCBN-PAB-2 protein; contains similarity to Pfam domains PF00076 (RNA recognition motif), PF00658 (Poly-adenylate binding protein, unique domain); contains similarity to Interpro domains IPR002004 (Polyadenylate-binding protein/Hyperplastic disc protein), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036053 (PABC (PABP) domain), IPR035979 (RNA-binding domain superfamily), IPR000504 (RNA recognition motif domain), IPR006515 (Polyadenylate binding protein, human types 1, 2, 3, 4)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPredicted
VisibleGeneWBGene00156909
Corresponding_transcriptCBN18184.1
Corresponding_proteinCN11133
Corresponding_oligo_setGPL14142_CBN18184_1045-1104_0.876_53_C
GPL14142_CBN18184_1222-1281_0.858_72_B
GPL14142_CBN18184_1954-2013_0.947_1_A
Microarray_resultsGPL14142_CBN18184_1045-1104_0.876_53_C
GPL14142_CBN18184_1222-1281_0.858_72_B
GPL14142_CBN18184_1954-2013_0.947_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
12.1062From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
14.3481From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
14.3873From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
17.3819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
18.8659From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
19.9358From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
23.6484From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
47.1574From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000041054.55From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
91.1461From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
52.0031From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
61.0211From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
83.5363From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
84.7698From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
87.7607From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003835.1643From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
39.5922From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (16)
RemarkContig4.brenneri.jigsaw.164.mRNA164
Methodcurated