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WormBase Tree Display for CDS: CBN19607

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Name Class

CBN19607SMapS_parentSequenceCbre_Contig28
StructureSource_exons142
26222714
29813573
36223871
39194188
42564381
46034902
49495179
DB_infoDatabaseTREEFAMTREEFAM_IDTF351331
DB_remarkCBN-MIX-1.1 protein; contains similarity to Pfam domains PF02463 (RecF/RecN/SMC N terminal domain), PF06470 (SMC proteins Flexible Hinge Domain); contains similarity to Interpro domains IPR036277 (SMCs flexible hinge superfamily), IPR003395 (RecF/RecN/SMC, N-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR010935 (SMCs flexible hinge)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00158332
Corresponding_transcriptCBN19607.1
Corresponding_proteinCN04728
Corresponding_oligo_setGPL14142_CBN19607_1560-1619_0.922_8_A
GPL14142_CBN19607_1616-1675_0.932_4_C
GPL14142_CBN19607_1713-1772_0.925_7_B
Matching_cDNAFF089432Inferred_automaticallytranscript_builder.pl
FF095374Inferred_automaticallytranscript_builder.pl
FF098561Inferred_automaticallytranscript_builder.pl
FF101716Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN19607_1560-1619_0.922_8_A
GPL14142_CBN19607_1616-1675_0.932_4_C
GPL14142_CBN19607_1713-1772_0.925_7_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
25.4277From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
39.6354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
55.5153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
60.1128From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
69.9957From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
78.6029From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
89.2153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
95.9026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
186.903From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
29.127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
29.5251From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
31.4155From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
37.3049From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
38.0193From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003839.0054From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
40.1554From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.92.mRNA92
Methodcurated