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WormBase Tree Display for CDS: CBN20091

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Name Class

CBN20091SMapS_parentSequenceCbre_Contig83
StructureSource_exons1585
7261226
12732353
24022610
DB_infoDatabaseTREEFAMTREEFAM_IDTF105683
DB_remarkCBN-QARS-1 protein; contains similarity to Pfam domains PF00749 (tRNA synthetases class I (E and Q), catalytic domain), PF03950 (tRNA synthetases class I (E and Q), anti-codon binding domain), PF04557 (Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2), PF04558 (Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1); contains similarity to Interpro domains IPR020056 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal), IPR007639 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal), IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR004514 (Glutamine-tRNA synthetase), IPR020059 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain), IPR020058 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain), IPR011035 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily), IPR007638 (Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00158816
Corresponding_transcriptCBN20091.1
Corresponding_proteinCN00842
Corresponding_oligo_setGPL14142_CBN20091_1093-1152_0.821_62_B
GPL14142_CBN20091_1218-1277_0.804_82_A
GPL14142_CBN20091_2107-2166_0.956_2_C
Matching_cDNAFF103428Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN20091_1093-1152_0.821_62_B
GPL14142_CBN20091_1218-1277_0.804_82_A
GPL14142_CBN20091_2107-2166_0.956_2_C
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
12.9973From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
14.4564From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
15.6307From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
16.8359From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
17.1372From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
18.082From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
21.7157From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
21.7716From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
41.237From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
40.5638From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
41.4794From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
42.5171From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
70.1109From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
76.8331From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003854.5756From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
56.4098From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig53.brenneri.jigsaw.47.mRNA47
Methodcurated