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WormBase Tree Display for CDS: CBN20099

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Name Class

CBN20099SMapS_parentSequenceCbre_Contig1100
StructureSource_exons (13)
DB_infoDatabaseTREEFAMTREEFAM_IDTF352021
DB_remarkCBN-SUP-17.2 protein; contains similarity to Pfam domains PF00200 (Disintegrin), PF01562 (Reprolysin family propeptide), PF13574 (Metallo-peptidase family M12B Reprolysin-like); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR001762 (Disintegrin domain), IPR002870 (Peptidase M12B, propeptide)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00158824
Corresponding_transcriptCBN20099.1
Corresponding_proteinCN03666
Corresponding_oligo_setGPL14142_CBN13028_2046-2105_0.817_97_B
GPL14142_CBN13028_2120-2179_0.912_10_C
GPL14142_CBN13028_2343-2402_0.813_103_A
Matching_cDNAFF088379Inferred_automaticallytranscript_builder.pl
FF107251Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN13028_2046-2105_0.817_97_B
GPL14142_CBN13028_2120-2179_0.912_10_C
GPL14142_CBN13028_2343-2402_0.813_103_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
1.35096From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
1.81235From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
2.23118From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
2.73569From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
2.82134From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
3.03076From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.504From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
3.68786From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
37.8607From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
10.4579From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
11.9447From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
7.16953From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
9.65183From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
9.73238From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:00000387.92672From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
8.77193From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig2628.brenneri.jigsaw.1.mRNA1
Methodcurated