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WormBase Tree Display for CDS: CBN22705

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Name Class

CBN22705EvidenceCurator_confirmedWBPerson1983
SMapS_parentSequenceCbre_Contig28
StructureSource_exons1198
4041231
12772349
25952789
28362974
DB_infoDatabaseTREEFAMTREEFAM_IDTF300542
DB_remarkCBN-CDC-48.1 protein; contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF02359 (Cell division protein 48 (CDC48), N-terminal domain), PF02933 (Cell division protein 48 (CDC48), domain 2), PF09336 (Vps4 C terminal oligomerisation domain), PF17862 (AAA+ lid domain); contains similarity to Interpro domains IPR029067 (CDC48 domain 2-like superfamily), IPR003959 (ATPase, AAA-type, core), IPR015415 (Spastin/Vps4, C-terminal), IPR003338 (CDC48, N-terminal subdomain), IPR041569 (AAA ATPase, AAA+ lid domain), IPR004201 (CDC48, domain 2), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR003593 (AAA+ ATPase domain), IPR009010 (Aspartate decarboxylase-like domain superfamily), IPR005938 (AAA ATPase, CDC48 family)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00161430
Corresponding_transcriptCBN22705.1
Corresponding_proteinCN38457
Corresponding_oligo_setGPL14142_CBN22705_1976-2035_0.856_64_C
GPL14142_CBN22705_2315-2374_0.955_1_A
GPL14142_CBN22705_2412-2471_0.913_8_B
Matching_cDNAFF087354Inferred_automaticallytranscript_builder.pl
FF091784Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN22705_1976-2035_0.856_64_C
GPL14142_CBN22705_2315-2374_0.955_1_A
GPL14142_CBN22705_2412-2471_0.913_8_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
115.122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
44.3023From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
66.329From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
67.971From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
70.1357From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
81.2287From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
82.2622From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
92.0853From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
261.687From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
54.435From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
54.9965From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
59.6217From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
78.3781From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
87.3652From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:0000038149.996From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
151.846From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig345.brenneri.jigsaw.17.mRNA17
[131022 pad] Modified the splicing of the 1st 2 exons inline with RNASeq splice data and protein conservation with orthologs and paralogs.Curator_confirmedWBPerson1983
From_analysisRNASeq_Hillier_brenneri
Methodcurated