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WormBase Tree Display for CDS: CBN23769

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Name Class

CBN23769SMapS_parentSequenceCbre_Contig28
StructureSource_exons1108
172276
10851142
11891701
17462105
21552744
27913339
33843488
DB_infoDatabaseTREEFAMTREEFAM_IDTF352787
DB_remarkCBN-GMPS-1 protein; contains similarity to Pfam domains PF00117 (Glutamine amidotransferase class-I), PF00958 (GMP synthase C terminal domain), PF02540 (NAD synthase); contains similarity to Interpro domains IPR001674 (GMP synthase, C-terminal), IPR029062 (Class I glutamine amidotransferase-like), IPR004739 (GMP synthase, glutamine amidotransferase), IPR022310 (NAD/GMP synthase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR017926 (Glutamine amidotransferase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00162494
Corresponding_transcriptCBN23769.1
Corresponding_proteinCN02885
Corresponding_oligo_setGPL14142_CBN23769_1477-1536_0.890_23_C
GPL14142_CBN23769_1807-1866_0.882_28_A
GPL14142_CBN23769_1946-2005_0.911_12_B
Matching_cDNAFF091527Inferred_automaticallytranscript_builder.pl
FF097613Inferred_automaticallytranscript_builder.pl
FF105191Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN23769_1477-1536_0.890_23_C
GPL14142_CBN23769_1807-1866_0.882_28_A
GPL14142_CBN23769_1946-2005_0.911_12_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
39.1446From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
44.6398From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
55.5594From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
59.4489From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
63.8559From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
70.6516From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
75.5417From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
81.5092From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
100.6From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
21.5828From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
23.4806From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
28.1206From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
33.7906From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
36.5702From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003846.6036From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
48.0501From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.87.mRNA87
Methodcurated