Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: CBN25696

expand all nodes | collapse all nodes | view schema

Name Class

CBN25696SMapS_parentSequenceCbre_Contig28
StructureSource_exons (25)
DB_infoDB_remarkCBN-PTP-3 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00102 (Protein-tyrosine phosphatase), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR029021 (Protein-tyrosine phosphatase-like), IPR013783 (Immunoglobulin-like fold), IPR000242 (Tyrosine-specific protein phosphatase, PTPase domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00164421
Corresponding_transcriptCBN25696.1
Corresponding_proteinCN13333
Corresponding_oligo_setGPL14142_CBN25696_6266-6325_0.837_94_C
GPL14142_CBN25696_6401-6460_0.916_10_B
GPL14142_CBN25696_6866-6925_0.943_2_A
Matching_cDNAFF102644Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN25696_6266-6325_0.837_94_C
GPL14142_CBN25696_6401-6460_0.916_10_B
GPL14142_CBN25696_6866-6925_0.943_2_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.1408From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
11.2913From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
12.6173From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
14.4745From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
4.83541From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
8.73403From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
8.80153From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
8.83735From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
79.556From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
19.5865From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
24.8796From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
30.1328From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
33.0402From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
34.4312From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003811.0477From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
12.3843From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.81.mRNA81
Methodcurated