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WormBase Tree Display for CDS: CBN25902

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Name Class

CBN25902SMapS_parentSequenceCbre_Contig28
StructureSource_exons176
122261
313402
446834
8861141
DB_infoDatabaseTREEFAMTREEFAM_IDTF314811
DB_remarkcontains similarity to Pfam domain PF06682 (SOCE-associated regulatory factor of calcium homoeostasis); contains similarity to Interpro domain IPR009567 (Store-operated calcium entry-associated regulatory factor)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00164627
Corresponding_transcriptCBN25902.1
Corresponding_proteinCN01864
Corresponding_oligo_setGPL14142_CBN25902_235-294_0.802_49_C
GPL14142_CBN25902_405-464_0.930_6_A
GPL14142_CBN25902_823-882_0.949_1_B
Matching_cDNAFF098974Inferred_automaticallytranscript_builder.pl
FF102291Inferred_automaticallytranscript_builder.pl
FF102665Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN25902_235-294_0.802_49_C
GPL14142_CBN25902_405-464_0.930_6_A
GPL14142_CBN25902_823-882_0.949_1_B
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
10.4678From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
10.8051From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
11.6025From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
12.5383From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
14.1528From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
16.6759From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
4.93156From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
7.06578From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
38.0571From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
42.6204From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
50.1226From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
50.5359From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
53.8815From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
54.3642From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003844.5179From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
46.8232From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (15)
RemarkContig18.brenneri.jigsaw.35.mRNA35
Methodcurated