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WormBase Tree Display for CDS: CBN29840

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Name Class

CBN29840SMapS_parentSequenceCbre_Contig2
StructureSource_exons (30)
DB_infoDatabaseTREEFAMTREEFAM_IDTF352902
DB_remarkcontains similarity to Pfam domain PF00450 (Serine carboxypeptidase); contains similarity to Interpro domains IPR029058 (Alpha/Beta hydrolase fold), IPR001563 (Peptidase S10, serine carboxypeptidase)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis brenneri
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00191805
Corresponding_transcriptCBN29840.1
Corresponding_proteinCN37710
Corresponding_oligo_setGPL14142_CBN29840_1504-1563_0.646_659_B
GPL14142_CBN29840_3692-3751_0.708_472_A
GPL14142_CBN29840_926-985_0.730_397_C
GPL14142_CBN31635_1026-1085_0.951_1_A
Matching_cDNAFF081969Inferred_automaticallytranscript_builder.pl
FF084186Inferred_automaticallytranscript_builder.pl
FF106263Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14142_CBN29840_926-985_0.730_397_C
GPL14142_CBN29840_1504-1563_0.646_659_B
GPL14142_CBN29840_3692-3751_0.708_472_A
GPL14142_CBN31635_1026-1085_0.951_1_A
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
17.563From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
2.39264From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.2712From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
3.35192From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
4.06497From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
4.26464From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
4.80328From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
5.9649From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
WBls:000000410.4321From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
1.26849From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
10.4421From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
13.074From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
7.47082From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
7.87847From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
8.64639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:000003811.6173From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
14.0514From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
Remark[20090520 js] Original name Cbre_Contig2.brenneri.jigsaw.203
Methodcurated