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WormBase Tree Display for CDS: CJA01182

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Name Class

CJA01182SMapS_parentSequenceCjap.Contig18199
StructureSource_exons (12)
DB_infoDatabaseTREEFAMTREEFAM_IDTF101063
DB_remarkCJP-PIGU-1 protein; contains similarity to Pfam domains PF02207 (Putative zinc finger in N-recognin (UBR box)), PF06728 (GPI transamidase subunit PIG-U); contains similarity to Interpro domains IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR040204 (E3 ubiquitin-protein ligase UBR7), IPR003126 (Zinc finger, UBR-type), IPR009600 (GPI transamidase subunit PIG-U), IPR011011 (Zinc finger, FYVE/PHD-type)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00120386
Corresponding_transcriptCJA01182.1
Corresponding_proteinJA47857
Corresponding_oligo_setGPL14145_CJA01182_1109-1168_0.936_8_B
GPL14145_CJA01182_1172-1231_0.960_1_A
GPL14145_CJA01182_1183-1242_0.959_2_C
GPL14145_CJA17014_421-480_0.918_9_B
GPL14145_CJA17014_615-674_0.925_6_C
GPL14145_CJA17014_704-763_0.937_4_A
Matching_cDNAjaponica_GG5657|c7_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA01182_1109-1168_0.936_8_B
GPL14145_CJA01182_1172-1231_0.960_1_A
GPL14145_CJA01182_1183-1242_0.959_2_C
GPL14145_CJA17014_421-480_0.918_9_B
GPL14145_CJA17014_615-674_0.925_6_C
GPL14145_CJA17014_704-763_0.937_4_A
RNASeq_FPKMWBls:000000418.6794From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002711.174From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000388.3127From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
8.42261From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004113.5793From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
14.5546From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
16.1485From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
24.8111From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
64.0602From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
67.6763From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
71.2282From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
7.57011From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
Remarkbased on Augustus prediction Cjap.Contig18199.g27970.t1[100726 mh6]
Methodcurated