WormBase Tree Display for CDS: CJA01761

CJA01761 Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: Cjap.Contig18095
  Structure: Source_exons: 1 500
      555 635
      683 1048
      1333 1438
      1482 1764
      2096 2242
      2289 2445
      4231 4453
  DB_info: Database: TREEFAM TREEFAM_ID TF314308
    DB_remark: CJP-NCX-1 protein; contains similarity to Pfam domains PF01699 (Sodium/calcium exchanger protein), PF03160 (Calx-beta domain), PF16494 (C-terminal extension of sodium/calcium exchanger domain); contains similarity to Interpro domains IPR003644 (Na-Ca exchanger/integrin-beta4), IPR032452 (Sodium/calcium exchanger domain, C-terminal extension), IPR004837 (Sodium/calcium exchanger membrane region), IPR004836 (Sodium/calcium exchanger protein), IPR038081 (CalX-like domain superfamily)
  Origin: From_laboratory: RW
    Species: Caenorhabditis japonica
  Properties: Coding: CDS
      Prediction_status: Confirmed
  Visible: Gene: WBGene00120965
    Corresponding_transcript: CJA01761.1
    Corresponding_protein: JA67330
    Corresponding_oligo_set: GPL14145_CJA01761_786-845_0.961_1_B
      GPL14145_CJA01761_789-848_0.953_3_C
      GPL14145_CJA01761_886-945_0.960_2_A
      GPL14145_CJA12533_129-188_0.966_1_A
      GPL14145_CJA28765_49-108_0.961_1_A
    Matching_cDNA: FF116238 Inferred_automatically: transcript_builder.pl
      FF131396 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14145_CJA01761_786-845_0.961_1_B
      GPL14145_CJA01761_789-848_0.953_3_C
      GPL14145_CJA01761_886-945_0.960_2_A
      GPL14145_CJA12533_129-188_0.966_1_A
      GPL14145_CJA28765_49-108_0.961_1_A
    RNASeq_FPKM: WBls:0000004 7.90339 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 32.657 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 23.4587 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        23.9513 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 11.1684 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        11.3108 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        12.7404 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        19.0492 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        19.8259 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        20.1054 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        3.11704 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        8.23671 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
    Remark: based on Augustus prediction Cjap.Contig18095.g24702.t1[100726 mh6]
  Method: curated