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WormBase Tree Display for CDS: CJA04595

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Name Class

CJA04595EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig17890
StructureSource_exons132
343433
21182303
24632681
27352793
33123495
DB_infoDB_remarkCJP-CEH-34 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF16878 (Transcriptional regulator, SIX1, N-terminal SD domain); contains similarity to Interpro domains IPR031701 (Homeobox protein SIX1, N-terminal SD domain), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00123799
Corresponding_transcriptCJA04595.1
Corresponding_proteinJA20845
Corresponding_oligo_setGPL14145_CJA04595_47-106_0.852_14_C
GPL14145_CJA04595_319-378_0.936_1_A
GPL14145_CJA04595_421-480_0.883_6_B
Matching_cDNAFD513535Inferred_automaticallytranscript_builder.pl
FD513686Inferred_automaticallytranscript_builder.pl
FF117481Inferred_automaticallytranscript_builder.pl
FF132248Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA04595_319-378_0.936_1_A
GPL14145_CJA04595_421-480_0.883_6_B
GPL14145_CJA04595_47-106_0.852_14_C
RNASeq_FPKMWBls:000000439.897From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000279.48518From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000387.25288From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
9.28097From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.41528From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
1.58122From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
2.70471From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
2.96947From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
3.08192From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
3.5272From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
3.60297From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
4.03116From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
Remarkbased on Augustus prediction Cjap.Contig17890.g21311.t1[100726 mh6]
Methodcurated